Projects: Medical bioinformatics in immuno-oncology

In recent years, immunotherapies, such as CAR-T cell therapies, have shown great success in hematologic malignancies. However, major challenges remain. Here, we use in-silico methods to elucidate molecular mechanisms that influence the mode of action and the occurrence of side effects as well as treatment resistance of immunotherapies. We are developing biomarkers that can be used for robust quality control of the manufacturing process as well as for the identification of patient groups that benefit from immunotherapy.


In biomedical research, classical hypothesis-driven research is supplemented by the use of so-called “omics” technologies based on systematic data-driven approaches. On the one hand, this helps to significantly accelerate the identification and understanding of the molecular bases of pathological processes. On the other hand, considerable potential still remains unused since, at present, most of the players in health research and healthcare are not able to use the enormous data volumes to their full extent and to develop these into an innovative value chain for the patients’ benefit. Moreover, there are special challenges in the field of the data protection compliant provision of clinical research data for the international research community.

Therefore, with its MED-connect project, Fraunhofer will provide a modern platform for data management, analysis and research which safeguards connectivity to external partners and initiatives, in addition to local data management. 

This platform is designed to facilitate complex interdisciplinary and interinstitutional data research under consideration of data protection and security. 

To do this, Fraunhofer IZI contributes its expertise in the field of bioinformatics and cell-based treatments. As a result, the particularities of applications in cellular immunotherapy are consistently considered in the development of the MED-connect platform.

Project partner

  • Fraunhofer Institute for Toxicology and Experimental Medicine ITEM
  • Fraunhofer Institute for Cognitive Systems IKS
  • Fraunhofer Institute for Computer Graphics Research IGD
  • Fraunhofer Institute for Algorithms and Scientific Computing SCAI
  • Fraunhofer Institute for Integrated Circuits IIS
  • Fraunhofer Institute for Digital Medicine MEVIS

Development of innovative model systems for the evaluation of immunomodulating therapeutics

Logo imSAVAR

A significant challenge facing the development of immunomodulating therapies is their preclinical evaluation in terms of efficacy and safety. The greatest problem here is the complexity of the human immune system. The EU consortium imSAVAR (Immune Safety Avatar: nonclinical mimicking of the immune system effects of immunomodulatory therapies) is addressing these challenges by coming up with new ways of examining immunomodulatory therapies. Existing model systems are to be improved and new ones developed in order to identify adverse side effects of new therapies affecting the immune system. Furthermore, new biomarkers for diagnosing and predicting immune-mediated pharmacology and toxicities will be developed. The focus is also on more detailed research into toxicity mechanisms and the potential for their mitigation via therapeutic interventions.

The interdisciplinary imSAVAR consortium is made up of 28 international partners from 11 nations and is being coordinated by the Fraunhofer IZI and Novartis. Partners include university and non-university research facilities, pharmaceutical and biotechnology companies, as well as regulatory authorities.

Besides coordinating the overall project, Fraunhofer IZI focuses in particular on predicting and evaluating adverse effects caused by novel immunotherapies specifically developed for oncological and inflammatory diseases. This involves optimizing and developing respective models (in situ, in vitro, in vivo, in silico) and biomarkers that take into account the highly complex modes of action typical of immunotherapies.

This project receives funding from the Innovative Medicines Initiative 2 Joint Undertaking under grant agreement No 853988. This Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation programme and EFPIA.

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T2Evolve – accelerating development and increasing awareness and access of patients with cancer to immunotherapy


T2EVOLVE is a new breakthrough alliance of academic and industry leaders in cancer immunotherapy under the European Union’s Innovative Medicines Initiative (IMI). The key objective of T2EVOLVE is to accelerate development and increase awareness and access of cancer patients to immunotherapy with immune cells that harbor a genetically engineered T-cell receptor (TCR) or synthetic chimeric antigen receptor (CAR). Simultaneously, T2EVOLVE aims to provide guidance on sustainable integration of these treatment into the EU healthcare system.

Within the project we will use single-cell and spatial transcriptomics for toxicity and efficacy assessment of engineered T-cell or CAR T-cell therapies.

Project coordination
University Hospital Würzburg

Grant Agreement No

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Targeted Design of Natural Killer Cells for Immunotherapy of Acute Myeloid Leukemia

The overarching goal of this consortium project funded by the German Cancer Aid is the development of an effective CAR-NK immunotherapy for AML patients. We investigate the influence of factors in the microenvironment on the activity on CAR-NK cells using NGS analyses from patient material and model systems. Additionally, we accompany the GMP-conform production process for CAR-NK cells with NGS analyses and corresponding bioinformatics to identify intrinsic factors of NK cells for a successful production process.


SaxoCell Technology Platform

SaxoCell Omics


EU project



EU project