Publication list

Fraunhofer Institute for Cell Therapy and Immunology IZI

Publications 2012

  • Arnold A, Naaldijk YM, Fabian C, Wirth H, Binder H, Nikkhah G, Armstrong L, Stolzing A. Reprogramming of Human Huntington Fibroblasts Using mRNA. ISRN Cell Biology, Volume 2012 (2012), Article ID 124878, 12 pages. doi:10.5402/2012/124878. Article
  • Averill MM, Kerkhoff C, Bornfeldt KE. S100A8 and S100A9 in cardiovascular biology and disease. Arterioscler Thromb Vasc Biol. 32 (2012), 2, S. 223-9. doi: 10.1161/ATVBAHA.111.236927.
  • Bañares R, Nevens F, Larsen FS, Jalan R, Albillos A, Dollinger M, Saliba F, Sauerbruch T, Klammt S, Ockenga J, Pares A, Wendon J, Brünnler T, Kramer L, Mathurin P, Mata MD, Gasbarrini A, Müllhaupt B, Wilmer A, Laleman W, Eefsen M, Sen S, Zipprich A, Tenorio T, Pavesi M, Schmidt HH, Mitzner S, Williams R, Arroyo V. Extracorporeal albumin dialysis with the molecular adsorbent recirculating system in acute-on-chronic liver failure: The RELIEF trial. Hepatology. 2012. doi: 10.1002/hep.26185. [Epub ahead of print]
  • Beer S, Gomez T, Dallinger D, Momber I, Marnay C, Stadler M, Lai J. An economic analysis of used electric vehicle batteries integrated into commercial building microgrids. IEEE transactions on smart grid 3 (2012), 1, S.517-525. doi: 10.1109/TSG.2011.2163091.
  • Boltze J, Kleinschnitz C, Reymann KG, Reiser G, Wagner DC, Kranz A, Michalski D; the meeting contributors. Neurovascular pathophysiology in cerebral ischemia, dementia and the ageing brain - current trends in basic, translational and clinical research. Exp Transl Stroke Med. 4 (2012), 1:14. doi: 10.1186/2040-7378-4-14.
  • Boltze J, Reich DM, Hau S, Reymann KG, Strassburger M, Lobsien D, Wagner DC, Kamprad M, Stahl T. Assessment of neuroprotective effects of human umbilical cord blood mononuclear cell subpopulations in vitro and in vivo. Cell Transplant. 21 (2012), 4, S. 723-737. doi: 10.3727/096368911X586783.
  • Boltze J, Schmidt UR, Reich DM, Kranz A, Reymann KG, Strassburger M, Lobsien D, Wagner DC, Förschler A, Schäbitz WR. Determination of the therapeutic time window for human umbilical cord blood mononuclear cell transplantation following experimental stroke in rats. Cell Transplant. 21 (2012), 6, S. 1199-211. doi: 10.3727/096368911X589609.
  • Burkhardt J, Kirsten H, Holland H, Krupp W, Ligges C, Quente E, Boltze J, Ahnert P, Wilcke A. Association of rs2069459 in the CDK5 gene with dyslexia in a German cohort. Psychiatric Genetics. 22 (2012), 6, S. 307-308. doi: 10.1097/ YPG.0b013e328353aeae.
  • Burkhardt J, Kirsten H, Wolfram G, Quente E, Ahnert P. Differential allelic expression of IL13 and CSF2 genes associated with asthma. Genetics and molecular biology, 35(2012), 3, S. 567-574. doi: 10.1590/S1415-47572012005000055.
  • Colley H, McArthur SL, Stolzing A, Scutt A. Culture on fibrin matrices maintains the colony-forming capacity and osteoblastic differentiation of mesenchymal stem cells. Biomed Mater. 7 (2012), 4:045015. doi: 10.1088/1748-6041/7/4/045015.
  • De Filette M, Ulbert S, Diamond M, Sanders NN. Recent progress in West Nile virus diagnosis and vaccination. Vet Res.43 (2012), 1, S. 16. doi: 10.1186/1297-9716-43-16.
  • Engelhardt J, Stadler PF. Hidden treasures in unspliced EST data. Theory in Biosciences 131 (2012), 1, S.49-57. doi: 10.1007/s12064-012-0151-6.
  • Fricke S, Fricke C, Oelkrug C, Blatz R, Schönfelder U, Niederwieser D, Hilger N, Ruhnke M, Rodloff AC. A real-time PCR for the detection and characterisation of Aspergillus species. Mycoses. 55 (2012), 5, S. 416-25. doi: 10.1111/j.1439-0507.2011.02161.x.
  • Fricke S, Rothe K, Hilger N, Ackermann M, Oelkrug C, Fricke C, Schönfelder U, Niederwieser D, Emmrich F, Sack U. Allogeneic bone marrow grafts with high levels of CD4(+) CD25(+) FoxP3(+) T cells can lead to engraftment failure. Cytometry A. 81 (2012), 6, S. 476-88. doi: 10.1002/cyto.a.22061.
  • Fueldner C, Mittag A, Knauer J, Biskop M, Hepp P, Scholz R, Wagner U, Sack U, Emmrich F, Tárnok A, Lehmann J. Identification and evaluation of novel synovial tissue biomarkers in rheumatoid arthritis by laser scanning cytometry. Arthritis Res Ther. 14 (2012), 1:R8. doi: 10.1186/ar3682.
  • Fuellen G, Dengjel J, Hoeflich A, Hoeijemakers J, Kestler HA, Kowald A, Priebe S, Rebholz-Schuhmann D, Schmeck B, Schmitz U, Stolzing A, Sühnel J, Wuttke D, Vera J. Systems Biology and Bioinformatics in Aging Research: A Workshop Report. Rejuvenation Res. 15 (2012), 6, S. 631 -641. doi: 10.1089/rej.2012.1360.
  • Hellmuth M, Ostermeier L, Stadler PF. A survey on hypergraph products. Mathematics in Computer Science 6 (2012), 1, S.1-32. doi: 10.1007/s11786-012-0109-6.
  • Hellmuth M, Ostermeier L, Stadler PF. Diagonalized Cartesian products of S-prime graphs are S-prime. Discrete mathematics 312 (2012), 1, S.74-80. doi: 10.1016/j.disc.2011.03.033.
  • Hertel J, Bartschat S, Wintsche A, Otto C, Stadler PF. Evolution of the let-7 microRNA Family. RNA biology 9 (2012), 3, S.231-241. doi: 10.4161/rna.9.3.18974.
  • Hinz D, Bauer M, Röder S, Olek S, Huehn J, Sack U, Borte M, Simon JC, Lehmann I, Herberth G; for the LINA study group. Cord blood Tregs with stable FOXP3 expression are influenced by prenatal environment and associated with atopic dermatitis at the age of one year. Allergy. 67 (2012), 3, S. 380 - 389. doi: 10.1111/j.1398-9995.2011.02767.x.
  • Hinze A, Stolzing A. Microglia differentiation using a culture system for the expansion of mice non-adherent bone marrow stem cells. J Inflamm (Lond). 9 (2012), 1:12. doi: 10.1186/1476-9255-9-12.
  • Hofacker IL, Reidys CM, Stadler PF. Symmetric circular matchings and RNA folding. Discrete mathematics 312 (2012), 1, S.100-112. doi: 10.1016/j.disc.2011.06.004.
  • Holland H, Ahnert P, Koschny R, Kirsten H, Bauer M, Schober R, Meixensberger J, Fritzsch D, Krupp W. Detection of novel genomic aberrations in anaplastic astrocytomas by GTG-banding, SKY, locusspecific FISH, and high density SNP-array. Pathology, research and practice, 208 (2012), 6, S. 325-330. doi: 10.1016/j.prp.2012.03.010.
  • Johnson AA, Akman K, Calimport SR, Wuttke D, Stolzing A, de Magalhães JP. The role of DNA methylation in aging, rejuvenation, and age-related disease. Rejuvenation Res. 15 (2012), 5, S. 483-94. doi: 10.1089/rej.2012.1324.
  • Jühling F, Pütz J, Bernt M, Donath A, Middendorf M, Florentz C, Stadler PF. Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements. Nucleic Acids Research 40 (2012), 7, S.2833-2845. doi: 10.1093/nar/gkr1131.
  • Jühling F, Putz J, Florentz C, Stadler PF. Armless mitochondrial tRNAs in enoplea (nematoda). RNA biology 9 (2012), 9, S.1161-1166. doi: 10.4161/rna.21630.
  • Kerkhoff C, Voss A, Scholzen TE, Averill MM, Zänker KS, Bornfeldt KE. Novel insights into the role of S100A8/A9 in skin biology. Exp Dermatol. 21 (2012), 11, S. 822 - 6. doi: 10.1111/j.1600-0625.2012.01571.x.
  • Kielstein JT, Beutel G, Fleig S, Steinhoff J, Meyer TN, Hafer C, Kuhlmann U, Bramstedt J, Panzer U, Vischedyk M, Busch V, Ries W, Mitzner S, Mees S, Stracke S, Nürnberger J, Gerke P, Wiesner M, Sucke B, Abu-Tair M, Kribben A, Klause N, Schindler R, Merkel F, Schnatter S, Dorresteijn EM, Samuelsson O, Brunkhorst R; Collaborators of the DGfN STEC-HUS registry. Best supportive care and therapeutic plasma exchange with or without eculizumab in Shiga-toxin-producing E. coli O104:H4 induced haemolytic-uraemic syndrome: an analysis of the German STEC-HUS registry. Nephrol Dial Transplant. 27 (2012), 10, S. 3807-15. doi: 10.1093/ndt/gfs394.
  • Kirsten H, Wilcke A, Ligges C, Boltze J, Ahnert P. Association study of a functional genetic variant in KIAA0319 in German dyslexics. Psychiatric Genetics. 22 (2012), 4, S. 216-217. doi: 10.1097/YPG.0b013e32834c0c97.
  • Klammt S, Wojak HJ, Mitzner A, Koball S, Rychly J, Reisinger EC, Mitzner S. Albumin-binding capacity (ABiC) is reduced in patients with chronic kidney disease along with an accumulation of protein-bound uraemic toxins. Nephrol Dial Transplant. 27 (2012), 6, S. 2377-83. doi: 10.1093/ndt/gfr616.
  • Klemm K, Mehta A, Stadler PF. Landscape encodings enhance optimization. PLoS one. Online journal 7 (2012), 4, Art. E34780. doi: 10.1371/journal.pone.0034780.
  • Klionsky DJ and 1269 others. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8 (2012), 4, S. 445 - 544. doi: 10.4161/auto.19496.
  • Koch H, Graneist C, Emmrich F, Till H, Metzger R, Aupperle H, Schierle K, Sack U, Boldt A. Xenogenic esophagus scaffolds fixed with several agents: comparative in vivo study of rejection and inflammation. J Biomed Biotechnol. 2012; 2012:948320. doi: 10.1155/2012/948320.
  • Kuhlmeier D, Sandetskaya N, Allelein S. Application of nanotechnology in miniaturized systems and its use in medical and food analysis. Recent Pat Food Nutr Agric. 4 (2012), 3, S. 187-99. doi: 10.2174/2212798411204030187.
  • Lange F, Sack U. Gelenkentzündungen : Modellsysteme für die Arthritisforschung. GIT Spezial BIOforum 1/2012, S. 28-30. GIT Labor-Fachzeitschrift 56 (2012), 6, S. 459-461. Article
  • Langenberger D, Pundhir S, Ekstrom CT, Stadler PF, Hoffmann S, Gorodkin J. deepBlockAlign: A tool for aligning RNA-seq profiles of read block patterns. Bioinformatics 28 (2012), 1, S.17-24. doi: 10.1093/bioinformatics/btr598.
  • Leichsenring A, Lange F. Tiermodelle in der präklinischen Forschung. GIT Labor-Fachzeitschrift 56 (2012), 12, S. 848–849. Article
  • Maletzki C, Bodammer P, Breitrück A, Kerkhoff C. S100 proteins as diagnostic and prognostic markers in colorectal and hepatocellular carcinoma. Hepat Mon. 2012, 12 (10 HCC):e7240. doi: 10.5812/hepatmon.7240.
  • Michalski D, Heindl M, Kacza J, Laignel F, Küppers-Tiedt L, Schneider D, Grosche J, Boltze J, Löhr M, Hobohm C, Härtig W. Spatio-temporal course of macrophage-like cell accumulation after experimental embolic stroke depending on treatment with tissue plasminogen activator and its combination with hyperbaric oxygenation. Eur J Histochem. 2012, 56(2):e14. doi: 10.4081/ejh.2012.14.
  • Möller K, Stahl T, Boltze J, Wagner DC. Isolation of inflammatory cells from rat brain tissue after stroke. Exp Transl Stroke Med. 4 (2012), 1:20. doi: 10.1186/2040-7378-4-20.
  • Naaldijk Y, Staude M, Fedorova V, Stolzing A. Effect of different freezing rates during cryopreservation of rat mesenchymal stem cells using combinations of hydroxyethyl starch and dimethylsulfoxide. BMC Biotechnol. (2012) 12:49. doi: 10.1186/1472-6750-12-49.
  • Ostermeier L, Hellmuth M, Stadler PF. The Cartesian product of hypergraphs. Journal of Graph Theory 70 (2012), 2, S.180-196. doi: 10.1002/jgt.20609.
  • Otto C, Reiche K, Hackermüller J. Detection of differentially expressed segments in tiling array data. In: Bioinformatics 28 (2012), 11, S.1471-1479. doi: 10.1093/bioinformatics/bts142.
  • Otto C, Stadler PF, Hoffmann S. Fast and sensitive mapping of bisulfite-treated sequencing data. Bioinformatics 28 (2012), 13, S.1698-1704. doi: 10.1093/bioinformatics/bts254.
  • Pohler P, Lehmann J, Veneruso V, Tomm J, v. Bergen M, Lambrecht B, Kohn B, Weingart C, Müller TH, Seltsam A. Evaluation of the tolerability and immunogenicity of ultraviolet C-irradiated autologous platelets in a dog model. Transfusion. 52 (2012), 11, S. 2414-26. doi: 10.1111/j.1537-2995.2012.03583.x.
  • Polchow B, Kebbel K, Schmiedeknecht G, Reichardt A, Henrich W, Hetzer R, Lueders C. Cryopreservation of human vascular umbilical cord cells under good manufacturing practice conditions for future cell banks. J Transl Med. 2012; 10:98. doi: 10.1186/1479-5876-10-98.
  • Pösel C, Möller K, Fröhlich W, Schulz I, Boltze J, Wagner DC. Density gradient centrifugation compromises bone marrow mononuclear cell yield. PLoS One. 7 (2012), 12:e50293. doi: 10.1371/journal.pone.0050293.
  • Sauer M, Altrichter J, Mencke T, Klöhr S, Thomsen M, Kreutzer HJ, Nöldge-Schomburg G, Mitzner SR. Plasma separation by centrifugation and subsequent plasma filtration: impact on survival in a pig model of sepsis. Ther Apher Dial. 16 (2012), 3, S. 205-12. doi: 10.1111/j.1744-9987.2011.01055.x.
  • Sauer M, Haubner C, Mencke T, Nöldge-Schomburg G, Mitzner S, Altrichter J, Stange J. Impaired cell functions of hepatocytes incubated with plasma of septic patients. Inflamm Res. 61 (2012), 6, S. 609-16. doi: 10.1007/s00011-012-0451-9.
  • Schmidtke C, Findeiß S, Sharma CM, Kuhfuß J, Hoffmann S, Vogel J, Stadler PF, Bonas U. Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucleic Acids Research 40 (2012), 5, S.2020-2031. doi: 10.1093/nar/gkr904.
  • Scholbach J, Schulz A, Westphal F, Egger D, Wege AK, Patties I, Köberle M, Sack U, Lange F. Comparison of hematopoietic stem cells derived from fresh and cryopreserved whole cord blood in the generation of humanized mice. PLoS One. 7 (2012), 10:e46772. doi: 10.1371/journal.pone.0046772.
  • Stolzing A, Bauer E, Scutt A. Suspension cultures of bonemarrow-derived mesenchymal stem cells: effects of donor age and glucose level. Stem Cells Dev. 21 (2012), 14, S. 2718-23. doi: 10.1089/scd.2011.0406.
  • Stolzing A, Naaldijk Y, Fedorova V, Sethe S. Hydroxyethylstarch in cryopreservation - mechanisms, benefits and problems. Transfus Apher Sci. 46 (2012), 2, S. 137-47. doi: 10.1016/j.transci.2012.01.007.
  • Terpolilli NA, Kim SW, Thal SC, Kataoka H, Zeisig V, Nitzsche B, Klaesner B, Zhu C, Schwarzmaier S, Meissner L, Mamrak U, Engel DC, Drzezga A, Patel RP, Blomgren K, Barthel H, Boltze J, Kuebler WM, Plesnila N. Inhalation of nitric oxide prevents ischemic brain damage in experimental stroke by selective dilatation of collateral arterioles. Circ Res. 110 (2012), 5, S. 727-38. doi: 10.1161/CIRCRESAHA.111.253419.
  • Tessema B, Beer J, Emmrich F, Sack U, Rodloff AC. Analysis of gene mutations associated with isoniazid, rifampicin and ethambutol resistance among Mycobacterium tuberculosis isolates from Ethiopia. BMC Infect Dis. 12 (2012) :37. doi: 10.1186/1471-2334-12-37.
  • Tessema B, Beer J, Emmrich F, Sack U, Rodloff AC. First- and second-line anti-tuberculosis drug resistance in Northwest Ethiopia. Int J Tuberc Lung Dis. 16 (2012), 6 S. 805-11. doi: 10.5588/ijtld.11.0522.
  • Tippmann SC, Ivanek R, Gaidatzis D, Scholer A, Hoerner L, Nimwegen E. van, Stadler PF, Stadler MB, Schubeler D. Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels. Molecular systems biology 8 (2012), Art.593. doi: 10.1038/msb.2012.23.
  • Voss A, Bode G, Kerkhoff C. Double-stranded RNA induces IL-8 and MCP-1 gene expression via TLR3 in HaCaTkeratinocytes. Inflamm Allergy Drug Targets. 11 (2012), 5, S. 397-405.
  • Voss A, Gescher K, Hensel A, Nacken W, Zänker KS, Kerkhoff C. Double-stranded RNA induces S100 gene expression by a cycloheximide-sensitive factor. FEBS Lett. 586 (2012), 2, S. 196-203. doi: 10.1016/j.febslet.2011.12.022.
  • Wagner DC, Bojko M, Peters M, Lorenz M, Voigt C, Kaminski A, Hasenclever D, Scholz M, Kranz A, Weise G, Boltze J. Impact of age on the efficacy of bone marrow mononuclear cell transplantation in experimental stroke. Exp Transl Stroke Med. 24(2012), 1:17. doi: 10.1186/2040-7378-4-17.
  • Wagner DC, Deten A, Härtig W, Boltze J, Kranz A. Changes in T2 relaxation time after stroke reflect clearing processes. Neuroimage.61 (2012), 4, S. 780-5. doi: 10.1016/j.neuroimage.2012.04.023.
  • Weise G, Stoll G. Magnetic resonance imaging of blood brain/nerve barrier dysfunction and leukocyte infiltration: closely related or discordant? Front Neurol. 2012; 3:178. doi: 10.3389/fneur.2012.00178.
  • Wilcke A, Ligges C, Burkhardt J, Alexander M, Wolf C, Quente E, Ahnert P, Hoffmann P, Becker A, Müller-Myhsok B, Cichon S, Boltze J, Kirsten H. Imaging genetics of FOXP2 in dyslexia. European Journal of Human Genetics, 20 (2012), 2, S. 224-229. doi: 10.1038/ejhg.2011.160.
  • Will S, Joshi T, Hofacker IL, Stadler PF, Backofen R. LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs. RNA 18 (2012), 5, S.900-914. doi: 10.1261/rna.029041.111.
  • Wuttig D, Zastrow S, Füssel S, Toma MI, Meinhardt M, Kalman K, Junker K, Sanjmyatav J, Boll K, Hackermüller J, Rolle A, Grimm M-O, Wirth MP. CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases. International journal of cancer 131 (2012), 5, S.E693-E704. doi: 10.1002/ijc.27419.

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Publications 2011

  • Boltze J, Kranz A, Wagner DC, Reymann K, Reiser G, Hess DC. Recent advances in basic and translational stroke research. Expert Rev Neurother. 2011 Feb;11(2):199-202.
  • Boltze J, Nitzsche B, Geiger KD, Schoon HA. Histopathological investigation of different MCAO modalities and impact of autologous bone marrow mononuclear cell administration in an Ovine stroke model. Translational Stroke Research 2 (2011), 3, S.279-293. doi: 10.1007/s12975-011-0101-5.
  • Boltze J, Reich DM, Hau S, Reymann KG, Strassburger M, Lobsien D, Wagner DC, Kamprad M, Stahl T. Assessment of neuroprotective effects of human umbilical cord blood mononuclear cell subpopulations in vitro and in vivo. Cell Transplant. 2011 Sep 16. doi: 10.3727/096368911X586783 [Epub ahead of print]
  • Boltze J, Schmidt UR, Reich DM, Kranz A, Reymann KG, Strassburger M, Lobsien D, Wagner DC, Förschler A, Schäbitz WR. Determination of the therapeutic time window for human umbilical cord blood mononuclear cell transplantation following experimental stroke in rats. Cell Transplant. 2011 Dec 13. doi: 10.3727/096368911X589609 [Epub ahead of print]
  • Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS. The reality of pervasive transcription. PLoS Biol. 9 (2011), 7, e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625.
  • Efimenko A, Starostina E, Kalinina N, Stolzing A. (2011) Angiogenic properties of aged adipose derived mesenchymal stem cells after hypoxic conditioning. J Transl Med. Jan 18;9(1):10. doi:10.1186/1479-5876-9-10. Article
  • Eggenhofer F, Tafer H, Stadler PF, Hofacker IL. RNApredator : fast accessibility-based prediction of sRNA targets. Nucleic Acids Res. 39 (2011), Supl. 2, W149-54. doi: 10.1093/nar/gkr467.
  • Fangmann J, Kathrin Al-Ali H, Sack U, Kamprad M, Tautenhahn HM, Faber S, Hauss J, Niederwieser D, Lindner T, Bachmann A. Kidney transplant from the same donor without maintenance immunosuppression after previous hematopoietic stem cell transplant. Am J Transplant. 11 (2011), 1, S. 156 - 62. doi: 10.1111/j.1600-6143.2010.03352.x.
  • Fasold M, Langenberger D, Binder H, Stadler PF, Hoffmann S. DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 39 (2011), Supl. 2, S. W112-7. doi: 10.1093/nar/gkr357.
  • Findeiss S, Engelhardt J, Prohaska SJ, Stadler PF. Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids. Biochimie. 93 (2011), 11, S. 2019-23. doi: 10.1016/j.biochi.2011.07.023.
  • Findeiss S, Langenberger D, Stadler PF, Hoffmann S. Traces of post-transcriptional RNA modifications in deep sequencing data. Biol Chem. 2392 (2011), 4, S. 305-13. doi: 10.1515/bc.2011.043.
  • Fricke S, Fricke C, Oelkrug C, Blatz R, Schönfelder U, Niederwieser D, Hilger N, Ruhnke M, Rodloff AC. A real-time PCR for the detection and characterisation of Aspergillus species. Mycoses. 2011 Dec 11. doi: 10.1111/j.1439-0507.2011.02161.x. [Epub ahead of print]
  • Grey D, Sack U, Scholz M, Knaack H, Fricke S, Oppel C, Luderer D, Fangmann J, Emmrich F, Kamprad M. Increased CD64 expression on polymorphonuclear neutrophils indicates infectious complications following solid organ transplantation. Cytometry A. 79 (2011), 6, S. 446 - 60. doi: 10.1002/cyto.a.21049.
  • Hinze A, Stolzing A. (2011) Differentiation of mouse bone marrow derived stem cells toward microglia. BMC Cell Biology. Aug 19;12(1):35. doi:10.1186/1471-2121-12-35. Article
  • Holland H, Livrea M, Ahnert P, Koschny R, Kirsten H, Meixensberger J, Bauer M, Schober R, Fritzsch D, Krupp W. Intracranial hemangiopericytoma: Case study with cytogenetics and genome wide SNP-A analysis. Pathol Res Pract. 2011 Feb 7. [Epub ahead of print]
  • Jühling F, Pütz J, Bernt M, Donath A, Middendorf M, Florentz C, Stadler PF. Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements. Nucleic Acids Res. 2011 Dec 1. [Epub ahead of print] doi: 10.1093/nar/gkr1131.
  • Kehr S, Bartschat S, Stadler PF, Tafer H. PLEXY : efficient target prediction for box C/D snoRNAs. Bioinformatics. 27 (2011), 2, S. 279-80. doi: 10.1093/bioinformatics/btq642.
  • Kim M, Garant KA, Zur Nieden N, Alain T, Loken SD, Urbanski SJ, Forsyth PA, Rancourt D, Lee PW, Johnston RN. Attenuated reovirus displays oncolysis with reduced host toxicity. The British journal of cancer. 104 (2011), 2, S. 290 - 299. doi: 10.1038/sj.bjc.6606053.
  • Kirsten H, Wilcke A, Ligges C, Boltze J, Ahnert P. Association study of a functional genetic variant in KIAA0319 in German dyslexics. Psychiatr Genet. 2011 Sep 20. doi: 10.1097/YPG.0b013e32834c0c97 [Epub ahead of print].
  • Knauer J, Krupka I, Fueldner C, Lehmann J, Straubinger RK. Evaluation of the preventive capacities of a topically applied azithromycin formulation against Lyme borreliosis in a murine model. J Antimicrob Chemother. 66 (2011), 12, S. 2814 - 2822. doi: 10.1093/jac/dkr371.
  • Krakauer DC, Collins JP, Erwin D, Flack JC, Fontana W, Laubichler MD, Prohaska SJ, West GB, Stadler PF. The challenges and scope of theoretical biology. J Theor Biol. 276 (2011), 1, S. 269-76. doi: 10.1016/j.jtbi.2011.01.051.
  • Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ. Proteinortho : detection of (co-)orthologs in large-scale analysis. BMC Bioinformatics. 12 (2011), 124, 9 S. doi: 10.1186/1471-2105-12-124.
  • Marz M, Stadler PF. RNA interactions. Adv Exp Med Biol. 722 (2011), S. 20-38. doi: 10.1007/978-1-4614-0332-6_2.
  • Menzel P, Stadler PF, Gorodkin J. MaxAlike : maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences. Bioinformatics. 27 (2011), 3, S. 317-25. doi: 10.1093/bioinformatics/btq651.
  • Michalski D, Pelz J, Weise C, Kacza J, Boltze J, Grosche J, Kamprad M, Schneider D, Hobohm C, Härtig W. Early outcome and blood-brain barrier integrity after co-administered thrombolysis and hyperbaric oxygenation in experimental stroke. Exp Transl Stroke Med. 3 (2011), 5, 9 S. doi: 10.1186/2040-7378-3-5.
  • Mocker K, Holland H, Ahnert P, Schober R, Bauer M, Kirsten H, Koschny R, Meixensberger J, Krupp W. Multiple meningioma with different grades of malignancy: case report with genetic analysis applying single-nucleotide polymorphism array and classical cytogenetics. Pathol Res Pract. 2011 Jan 15;207(1):67-72.
  • Oschatz C, Maas C, Lecher B, Jansen T, Björkqvist J, Tradler T, Sedlmeier R, Burfeind P, Cichon S, Hammerschmidt S, Müller-Esterl W, Wuillemin WA, Nilsson G, Renné T. Mast cells increase vascular permeability by heparin-initiated bradykinin formation in vivo. Immunity. 34 (2011), 2, S. 258-68. doi:: 10.1016/j.immuni.2011.02.008.
  • Otto C, Hoffmann S, Gorodkin J, Stadler PF. Fast local fragment chaining using sum-of-pair gap costs. Algorithms Mol Biol. 6 (2011), 4, 8 S. doi: 10.1186/1748-7188-6-4.
  • Paulsen K, Tauber S, Timm J, Goelz N, Dumrese C, Stolzing A, Hass R, Ullrich O. (2011) The cannabinoid receptors agonist WIN55212-2 inhibits macrophageal differentiation and alters expression and phosphorylation of cell cycle control proteins. Cell Commun Signal. Dec 28;9(1):33.
  • Perseke M, Hetmank J, Bernt M, Stadler PF, Schlegel M, Bernhard D. The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria. BMC Evol Biol. 11 (2011), 134, 12 S. doi: 10.1186/1471-2148-11-134.
  • Raincrow JD, Dewar K, Stocsits C, Prohaska SJ, Amemiya CT, Stadler PF, Chiu CH. Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny. J Exp Zool B Mol Dev Evol. 16 (2011), 6, S. 451-64. doi: 10.1002/jez.b.21420.
  • Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME. Topology and prediction of RNA pseudoknots. Bioinformatics. 27 (2011), 8, S. 1076-85. doi: 10.1093/bioinformatics/btr090.
  • Riegelsberger UM, Deten A, Pösel C, Zille M, Kranz A, Boltze J, Wagner DC. Intravenous human umbilical cord blood transplantation for stroke: impact on infarct volume and caspase-3-dependent cell death in spontaneously hypertensive rats. Exp Neurol. 2011 Jan;227(1):218-23. Epub 2010 Nov 16.
  • Roesler U, Szabo I, Matthies C, Albrecht K, Leffler M, Scherer K, Nöckler K, Lehmann J, Methner U, Hensel A, Truyen U. Comparing validation of four ELISA-systems for detection of Salmonella derby- and Salmonella infantis-infected pigs. Berl Munch Tierarztl Wochenschr. 124 (2011), 7-8, S. 265-71. doi: 10.2376/0005-9366-124-265.
  • Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF. Computational discovery of human coding and non-coding transcripts with conserved splice sites. Bioinformatics. 27 (2011), 14, S. 1894-900. doi: 10.1093/bioinformatics/btr314.
  • Rupf S, Idlibi AN, Marrawi FA, Hannig M, Schubert A, von Mueller L, Spitzer W, Holtmann H, Lehmann A, Rueppell A, Schindler A. Removing biofilms from microstructured titanium ex vivo: a novel approach using atmospheric plasma technology. PLoS One.6 (2011), 10, e25893, 9 S. doi: 10.1371/journal.pone.0025893
  • Schneeweiss A, Chabierski S, Salomo M, Delaroque N, Al-Robaiy S, Grunwald T, Bürki K, Liebert UG, Ulbert S. A DNA vaccine encoding the E protein of West Nile Virus is protective and can be boosted by recombinant domain DIII. Vaccine, 29 (2011), S. 6352-6357.
  • Schubert K, Polte T, Bönisch U, Schader S, Holtappels R, Hildebrandt G, Lehmann J, Simon JC, Anderegg U, Saalbach A. Thy-1 (CD90) regulates the extravasation of leukocytes during inflammation. Eur J Immunol. 41 (2011), 3, S. 645 - 656. doi: 10.1002/eji.201041117.
  • Skardelly M, Gaber K, Burdack S, Scheidt F, Hilbig H, Boltze J, Förschler A, Schwarz S, Schwarz J, Meixensberger J, Schuhmann MU. Long-term benefit of human fetal neuronal progenitor cell transplantation in a clinically adapted model after traumatic brain injury. J Neurotrauma. 28 (2011), 3, S. 401-14. doi: 10.1089/neu.2010.1526
  • Smith DM, Schüller V, Forthmann C, Schreiber R, Tinnefeld P, Liedl T. A structurally variable hinged tetrahedron framework from DNA origami. J. Nuc. Acid., 2011. doi:10.4061/2011/360954.
  • Stolzing A, Colley H, Scutt A. (2011) Effect of age and diabetes on the response of mesenchymal progenitor cells to fibrin matrices. Int J Biomater. 2011; 378034. Epub 2011 Dec 13. doi:10.1155/2011/378034. Article
  • Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Fast accessibility-based prediction of RNA-RNA interactions. Bioinformatics. 27 (2011), 14, S. 1934-40. doi: 10.1093/bioinformatics/btr281.
  • Terpolilli NA, Kim SW, Thal SC, Kataoka H, Zeisig V, Nitzsche B, Klaesner B, Zhu C, Schwarzmaier S, Meissner L, Mamrak U, Engel DC, Drzezga A, Patel RP, Blomgren K, Barthel H, Boltze J, Kuebler WM, Plesnila N. Inhalation of nitric oxide prevents Ischemic brain damage in experimental stroke by selective dilatation of Collateral Arterioles. Circ Res. 2011 Dec 29. doi: 10.1161/CIRCRESAHA.111.253419 [Epub ahead of print]
  • Tessema B, Beer J, Emmrich F, Sack U, Rodloff AC. Rate of recovery of Mycobacterium tuberculosis from frozen acid-fast-bacillus smear-positive sputum samples subjected to long-term storage in Northwest Ethiopia. J Clin Microbiol. 49 (2011), 7, S. 2557 - 61. doi: 10.1128/?JCM.00059-11.
  • Tramontano A, Donath A, Bernhart SH, Reiche K, Böhmdorfer G, Stadler PF, Bachmair A. Deletion analysis of the 3' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer. Virology. 412 (2011), 1, 75 - 82. doi: 10.1016/j.virol.2010.12.059.
  • Ulbert S. West Nile Virus: The Complex Biology of an Emerging Pathogen. Intervirology, 54 (2011), S. 171-184.
  • Ullrich A, Rohrschneider M, Scheuermann G, Stadler PF, Flamm C. In silico evolution of early metabolism. Artif Life. 17 (2011), 2, S. 87-108. doi: 10.1162/artl_a_00021.
  • Wagner DC, Riegelsberger UM, Michalk S, Härtig W, Kranz A, Boltze J. Cleaved caspase-3 expression after experimental stroke exhibits different phenotypes and is predominantly non-apoptotic. Brain Res. 2011 Mar 24;1381:237-42. Epub 2011 Jan 20.
  • Washietl S, Findeiss S, Müller SA, Kalkhof S, von Bergen M, Hofacker IL, Stadler PF, Goldman N. RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data. RNA. 17 (2011), 4, S. 578-94. doi: 10.1261/rna.2536111.
  • Wilcke A, Ligges C, Burkhardt J, Alexander M, Wolf C, Quente E, Ahnert P, Hoffmann P, Becker A, Müller-Myhsok B, Cichon S, Boltze J, Kirsten H. Imaging genetics of FOXP2 in dyslexia. Eur J Hum Genet. 20 (2012), 2, S. 224-9. doi: 10.1038/ejhg.2011.160.
  • Wuttig D, Zastrow S, Füssel S, Toma MI, Meinhardt M, Kalman K, Junker K, Sanjmyatav J, Boll K, Hackermüller J, Rolle A, Grimm MO, Wirth MP. CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases. Int J Cancer. 2011 Dec 31. doi: 10.1002/ijc.27419. [Epub ahead of print]
  • zu Siederdissen CH, Bernhart SH, Stadler PF, Hofacker IL. A folding algorithm for extended RNA secondary structures. Bioinformatics. 27 (2011), 13, S. i129-36. doi: 10.1093/bioinformatics/btr220

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Publications 2010

  • Al-Robaiy S, Dihazi H, Kacza J, Seeger J, Schiller J, Huster D, Knauer J, Straubinger RK. Metamorphosis of Borrelia burgdorferi organisms – RNA, lipid and protein composition in context with the spirochetes’ shape. Journal of Basic Microbiology. 50 (2010), Sup. 1, S. 5–17.
  • Amemiya CT, Powers TP, Prohaska SJ, Grimwood J, Schmutz J, Dickson M, Miyake T, Schoenborn MA, Myers R, Ruddle FH, Stadler PF. Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome. Proceedings of the National Academy of Sciences of the United States of America. 107 (2010), 8, S. 3622–3627.
  • Arnold C, Stadler PF. Polynomial algorithms for the Maximal Pairing Problem: efficient phylogenetic targeting on arbitrary trees. Algorithms for molecular biology. 5 (2010), 25, 10 S. DOI 10.1186/1748-7188-5-25.
  • Bermudez-Santana C, Attolini CSO, Kirsten T, Engelhardt J, Prohaska SJ, Steigele S, Stadler PF. Genomic organization of eukaryotic tRNAs. BMC genomics. 11 (2010), 270, 14 S. DOI 10.1186/1471-2164-11-270.
  • Boria I, Gruber A, Tanzer A, Bernhart SH, Lorenz R, Müller MM, Hofacker IL, Stadler PF. Nematode sbRNAs: homologs of vertebrate Y RNAs. Journal of molecular evolution. 70 (2010), 4, S. 346–358.
  • Chung NP, Breun SK, Bashirova A, Baumann JG, Martin TD, Karamchandani JM, Rausch JW, Le Grice SF, Wu L, Carrington M, Kewalramani VN. HIV-1 transmission by dendritic cell-specific ICAM-3-grabbing nonintegrin (DC-SIGN) is regulated by determinants in the carbo­hydrate recognition domain that are absent in liver/lymph node-SIGN (L-SIGN). J Biol Chem. 285 (2010), 3, S. 2100–2112.
  • Dienelt A, zur Nieden NI. Hyperglycemia impairs skeletogenesis from embryonic stem cells by affecting osteoblast and osteoclast differentiation. Stem Cells Dev. 2010 Nov 30 [Epub ahead of print]. DOI 10.1089/scd.2010.025
  • Fasold M, Stadler PF, Binder H. G-stack modulated probe intensities on expression arrays – sequence corrections and signal calibration. BMC bioinformatics. 11 (2010), 207, 24 S. DOI 10.1186/1471-2105-11-207.
  • Findeiß S, Schmidtke C, Stadler PF, Bonas U. A novel family of plasmid-transferred anti-sense ncRNAs. RNA biology. 7 (2010), 2, S. 120–124. DOI 10.4161/rna.7.2.11184.
  • Fricke S, Fricke C, Oelkrug C, Hilger N, Schönfelder U, Kamprad M, Lehmann J, Boltze J, Emmrich F, Sack U. Characterization of murine non-adherent bone marrow cells leading to recovery of endogenous hematopoiesis. Cell Mol Life Sci. 67 (2010), 23, S. 4095–4106.
  • Fricke S, Fricke C, Schimmelpfennig C, Oelkrug C, Schönfelder U, Blatz R, Zilch C, Faber S, Hilger N, Ruhnke M, Rodloff AC. A real-time PCR assay for the differentiation of Candida species. J Appl Microbiol. 109 (2010), 4, S 1150–1158.
  • Gessner C, Rechner B, Hammerschmidt S, Kuhn H, Hoheisel G, Sack U, Ruschpler P, Wirtz H. Angiogenic markers in breath condensate identify non-small cell lung cancer. Lung Cancer, 68 (2010), 2, S. 177–184.
  • Gorr TA, Wichmann D, Hu J, Hermes-Lima M, Welker AF, Terwilliger N, Wren JF, Viney M, Morris S, Nilsson GE, Deten A, Soliz J, Gassmann M. Hypoxia tolerance in animals: biology and application. Physiol Biochem Zool, 83 (2010), 5, S. 733–52.
  • Hemdan NY, Birkenmeier G, Wichmann G, Abu El-Saad A, Krieger T, Conrad K, Sack U. Interleukin-17-producing T helper cells in autoimmunity. Autoimmunity Reviews, 9 (2010), 11, S. 785–792.
  • Hinz D, Simon JC, Maier-Simon C, Milkova L, Röder S, Sack U, Borte M, Lehmann I, Herberth G. Reduced maternal regulatory T cell numbers and increased T helper type 2 cytokine production are associated with elevated levels of immunoglobulin E in cord blood. Clinical and Experimental Allergy. 40 (2010), 3, S. 419–426.
  • Hofacker I, Flamm C, Heine C, Wolfinger MT, Scheuermann G, Stadler PF. BarMap: RNA folding on dynamic energy landscapes, RNA. 16 (2010), 7, S. 1308–1316.
  • Huang FWD, Qin J, Reidys CM, Stadler PF. Target prediction and a statistical sampling algorithm for RNA-RNA interaction. Bioinformatics. 26 (2010), 2, S. 175–181.
  • Kranz A, Wagner DC, Kamprad M, Scholz M, Schmidt UR, Nitzsche F, Aberman Z, Emmrich F, Riegelsberger UM, Boltze J. Transplantation of placenta-derived mesenchymal stromal cells upon experimental stroke in rats. Brain Res, 1315 (2010), S. 128–36.
  • Lehmann J, Stadler PF, Eisenhardt C, Krauss V. Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication. BMC evolutionary biology. 10 (2010), 156, 15 S. DOI 10.1186/1471-2148-10-156
  • Lenz D, Barten MJ, Hiller S, Tarnok A, Sack U. Regenerative and predictive medicine of cardiovascular disease: the 9th Leipziger Workshop and the 2nd International Workshop on slide based cytometry. Cytom Part A, 64 (2005), 2, S. 110-114.
  • Lindner I. et al. alpha 2-Macroglobulin Inhibits the Malignant Properties of Astrocytoma Cells by Impeding beta-Catenin Signaling. Cancer Research, v. 70 (2010), no. 1, p. 277–287.
  • Marz M, Vanzo N, Stadler PF. Temperature-dependent structural variability of RNAs: spliced leader RNAs and their evolutionary history. Journal of bioinformatics and computational biology. 8 (2010), 1, S. 1–17.
  • Mühle A, Mühle C, Amann K, Dötsch J, Nüsken KD, Boltze J, Schneider H. No juvenile arterial hypertension in sheep multiples despite reduced nephron numbers. Pediatr Nephrol. 25 (2010), 9, S. 1653–61.
  • Müller M, Lutter D, Püschel AW. Persistence of the cell-cycle checkpoint kinase Wee1 in SadA- and SadB-deficient neurons disrupts neuronal polarity. J Cell Sci. 123 (2010), Pt 2, S. 286–94.
  • Perseke M, Bernhard D, Fritzsch G, Brümmer F, Stadler PF, Schlegel M. Mitochondrial genome evolution in Ophiuroidea, Echinoidea, and Holothuroidea: insights in phylogenetic relationships of Echinodermata. Molecular phylogenetics and evolution. 56 (2010), 1, S. 201–211.
  • Prohaska SJ, Stadler PF, Krakauer DC. Innovation in gene regulation: the case of chromatin computation. Journal of theoretical biology. 265 (2010), 1, S. 27–44.
  • Riester M, Stadler PF, Klemm K. Reconstruction of pedigrees in clonal plant populations. Theoretical population biology. 78 (2010), 2, S. 109–117.
  • Rupf S, Lehmann A, Hannig M, Schafer B, Schubert A, Feldmann U, Schindler A. Killing of adherent microbes by a non-thermal atmospheric plasma jet. J Med Microbiol. 59 (2010), Pt 2, S. 206–12.
  • Schneeweiss A, Buyens K, Giese M, Sanders N, Ulbert S. Synergistic effects between natural histone mixtures and polyethylenimine in non-viral gene delivery in vitro. Int J Pharm. 400 (2010), 1–2, S. 86–95.
  • Sharma C, Hoffmann S, Darfeuille F, Reignier J, Findeiß S, Sittka A, Chabas S, Reiche K, Hackermüller J, Reinhardt R, Stadler PF, Vogel J. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature. 464 (2010), 7286, S. 250–255.
  • Stadler BM, Stadler PF. Combinatorial vector fields and the valley structure of fitness landscapes. Journal of mathematical biology. 61 (2010), 6, S. 877–898.
  • Stolzing A, Sellers D, Llewelyn O, Scutt A. Diabetes induced changes in rat mesenchymal stem cells. Cells Tissues Organs. 191 (2010), 6, S. 453–65.
  • Tafer H, Kehr S, Hertel J, Hofacker IL, Stadler PF. RNAsnoop : efficient target prediction for H/ACA snoRNAs. Bioinformatics. 26 (2010), 5, S. 610–616.
  • Taiani JT, Krawetz RJ, zur Nieden NI, Wu YE, Kallos MS, Matyas JR, Rancourt DE. Reduced Differentiation Efficiency of Murine Embryonic Stem Cells in Stirred Suspension Bioreactors. Stem Cell Dev. (2010), 7, S. 989–998.
  • Tessema B, Biadglegne F, Mulu A, Getachew A, Emmrich F, Sack U. Magnitude and determinants of nonadherence and nonreadiness to highly active antiretroviral therapy among people living with HIV/AIDS in Northwest Ethiopia: a cross-sectional study. AIDS research and therapy, 7 (2010), 2, 8 S. DOI 10.1186/1742-6405-7-2.
  • Tessema B, Yismaw G, Kassu A, Amsalu A, Mulu A, Emmrich F, Sack U. Seroprevalence of HIV, HBV, HCV and syphilis infections among blood donors at Gondar University Teaching Hospital, Northwest Ethiopia: declining trends over a period of five years. BMC Infectious Diseases, 10 (2010), 111, 7 S. DOI 10.1186/1471-2334-10-111.
  • Yerebakan C, Klopsch C, Niefeldt S, Zeisig V, Vollmar B, Liebold A, Sandica E, Steinhoff G. Acute and chronic response of the right ventricle to surgically induced pressure and volume overload – an analysis of pressure-volume relations. Interact Cardiovasc Thorac Surg. 10 (2010), 4, S. 519–25.
  • Yerebakan C, Sandica E, Prietz S, Klopsch C, Ugurlucan M, Kaminski A, Abdija S, Lorenzen B, Boltze J, Nitzsche B, Egger D, Barten M, Furlani D, Ma N, Vollmar B, Liebold A, Steinhoff G. Autologous umbilical cord blood mononuclear cell transplantation preserves right ventricular function in a novel model of chronic right ventricular volume overload. Cell Transplant, 18 (2009), 8, S. 855-68.
  • zur Nieden NI, Baumgartner L. Assessing developmental osteotoxicity of chlorides in the embryonic stem cell test. Reprod Toxicol. 30 (2010), 2, S. 277–283.
  • zur Nieden NI, Davis LA, Rancourt DE. Comparing three novel endpoints for developmental osteotoxicity in the embryonic stem cell test. Toxicol Appl Pharmacol. 247 (2010), 2, S. 91–97.
  • zur Nieden NI, Davis LA, Rancourt DE. Monolayer cultivation of osteoprogenitors shortens duration of the embryonic stem cell test while reliably predicting developmental osteotoxicity. Toxicology.277 (2010), 1–3, S. 66–73.

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Publications 2009

  • Althues H, Pötschke P, Kim G M, Kaskel S. Structure and Mechanical Properties of Transparent ZnO/PBDMA Nanocomposites. J Nanosci Nanotechno, 9 (2009), 4, S. 2739-2745.
  • Aupperle H, Thielebein J, Kiefer B, März I, Dinges G, Schoon HA, Schubert A. Expression of genes encoding matrix metalloproteinases (MMPs) and their tissue inhibitors (TIMPs) in normal and diseased canine mitral valves. J Comp Pathol, 140 (2009), 4, S. 271-277.
  • Borte S, Liebert UG, Borte M, Sack U. Efficacy of measles, mumps and rubella revaccination in children with juvenile idiopathic arthritis treated with methotrexate and etanercept. Rheumatology, 48 (2009), 2, S. 144-148.
  • Borte S, Pan-Hammarstrom Q, Liu C, Sack U, Borte M, Wagner U, Graf D, Hammarström L. Interleukin-21 restores immunoglobulin production ex vivo in patients with common variable immunodeficiency and selective IgA deficiency. Blood, 114 (2009), 19, S. 4089-4098.
  • Burkhardt J, Petit-Teixeira E, Teixeira VH, Kirsten H, Garnier S, Ruehle S, Oeser C, Wolfram G, Scholz M, Migliorini P, Balsa A, Westhovens R, Barrera P, Alves H, Pascual-Salcedo D, Bombardieri S, Dequeker J, Radstake TR, Van Riel P, van de Putte L, Bardin T, Prum B, Buchegger-Podbielski U, Emmrich F, Melchers I, Cornelis F, Ahnert P. Association of the X-chromosomal genes TIMP1 and IL9R with rheumatoid arthritis. J Rheumatol, 36 (2009), 10, S.2149-2157.
  • Conant G, Stadler PF. Solvent exposure imparts similar selective pressures across a range of yeast proteins. Mol Biol Evol, 26 (2009), 5, S. 1155-1161.
  • Fisher M, Feuerstein G, Howells DW, Hurn PD, Kent TA, Savitz SI, Lo EH; STAIR Group. Update of the stroke therapy academic industry roundtable preclinical recommendations. Stroke, 40 (2009), 6, S. 2244-2250.
  • Fricke S, Ackermann M, Stolzing A, Schimmelpfennig C, Hilger N, Jahns J, Hildebrandt G, Emmrich F, Ruschpler P, Pösel C, Kamprad M, Sack U. Allogeneic non-adherent bone marrow cells facilitate hematopoietic recovery but do not lead to allogeneic engraftment. PLoS One  (2009), Jul 7, 4(7), e6157.
  • Fricke S, Fricke C, Schimmelpfennig C, Oelkrug C, Schönfelder U, Blatz R, Faber S, Zilch C, Hilger N, Ruhnke M, Rodloff A. New Real-time PCR assay for the differentiation of Candida species. Appl Microbiol (2009) (accepted JAM-2009-2135).
  • Gonzalez GE, Rabald S, Briest W, Gelpi RJ, Seropian I, Zimmer HG, Deten A. Ribose treatment reduced the infarct size and improved heart function after myocardial infarction in rats. Cell Physiol Biochem, 24 (2009), 3-4, S. 211-218.
  • Härtig W, Reichenbach A, Voigt C, Boltze J, Bulavina L, Schuhmann MU, Seeger J, Schusser GF, Freytag C, Grosche J. Triple fluorescence labelling of neuronal, glial and vascular markers revealing pathological alterations in various animal models. J Chem Neuroanat, 37 (2009), 2, S. 128-138.
  • Heinrich A, Riethmüller D, Gloger M, Schusser GF, Giese M, Ulbert S. RNA interference protects horse cells in vitro from infection with Equine Arteritis Virus. Antivir Res, 81 (2009), 3, S. 209-216.
  • Heintz D, Gallien S, Wischgoll S, Ullmann AK, Schaeffer C, Kretzschmar AK, van Dorsselaer A, Boll M. Differential membrane proteome analysis reveals novel proteins involved in the degradation of aromatic compounds in Geobacter metallireducens. Mol Cell Proteomics, 8 (2009), 9, S. 2159-2169.
  • Hellmuth M, Imrich W, Klöckl W, Stadler PF. Approximate graph products. Eur J Combin, 30 (2009), 5, S. 1119-1133.
  • Herberth G, Gubelt R, Röder S, Krämer U, Schins RP, Diez U, Borte M, Heinrich J, Wichmann HE, Herbarth O, Lehmann I, LISA plus study group. Increase of inflammatory markers after indoor renovation activities: the LISA birth cohort study. Pediatr Allergy Immu, 20 (2009), 6, S. 563-570.
  • Hertel J, De Jong D, Marz M, Rose D, Tafer H, Tanzer A, Schierwater B, Stadler PF. Non-coding RNA annotation of the genome of Trichoplax adhaerens. Nucleic Acids Res, 37 (2009), 5, S. 1602-1615.
  • Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermüller J. Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. PLoS Comput Biol, 5 (2009), 5(9), e1000502.
  • Jaen O, Petit-Teixeira E, Kirsten H, Ahnert P, Semerano L, Pierlot C, Cornelis F, Boissier MC, Falgarone G; European Consortium on Rheumatoid Arthritis Families. No evidence of major effects in several Toll-like receptor gene polymorphisms in rheumatoid arthritis. Arthritis Res Ther. 2009;11(1):R5. Epub 2009 Jan 13.
  • Kaczkowski B, Torarinsson E, Reiche K, Havgaard JH, Stadler PF, Gorodkin J. Structural profiles of human miRNA families from pairwise clustering. Bioinformatics, 25 (2009), 3, S. 291-294.
  • Kirsten H, Burkhardt J, Hantmann H, Hunzelmann N, Vaith P, Ahnert P, Melchers I. 5HT2A polymorphism His452Tyr in a German Caucasian systemic sclerosis population. Arthritis Res Ther, 11 (2009), 2, S. 403.
  • Kirsten H, Petit-Teixeira E, Hantmann H, Reichardt J, Burkhardt J, Emmrich F, Cornelis F, Ahnert P. A family-based study does not support the association of a functional polymorphism in the gene for endothelial nitric oxide synthase with risk for rheumatoid arthritis. Scand J Rheumatol, 38 (2009), 4, S. 320-321.
  • Kirsten H, Petit-Teixeira E, Scholz M, Hasenclever D, Hantmann H, Heider D, Wagner U, Sack U, Hugo Teixeira V, Prum B, Burkhardt J, Pierlot C, Emmrich F, Cornelis F, Ahnert P. Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study. Arthritis Res Ther, 11 (2009), 3, R60.
  • Krämer U, Sugiri D, Ranft U, Krutmann J, von Berg A, Berdel D, Behrendt H, Kuhlbusch T, Hochadel M, Wichmann HE, Heinrich J, GINIplus and LISAplus study groups. Eczema, respiratory allergies, and traffic-related air pollution in birth cohorts from small-town areas. J Dermatol Sci, 56 (2009), 2, S. 99-105.
  • Krupka I, Knauer J, Lorentzen L, O‘Connor TP, Saucier J, Straubinger RK. Borrelia burgdorferi sensu lato species in Europe induce diverse immune responses against C6 peptides in infected mice. Clin Vaccine Immunol, 16 (2009), 11, S. 1546-1562.
  • Lee SM, Grass G, Kim G M, Dresbach C, Zhang L, Gösele U, Knez M. Low-temperature ZnO atomic layer deposition on biotemplates: flexible photocatalytic ZnO structures from Eggshell Membranes. Phys Chem Chem Phys, 11 (2009), 19, S. 3608-3614.
  • Meier H, Bullinger J, Marx G, Deten A, Horn LC, Rassler B, Zimmer HG, Briest W. Crucial role of interleukin-6 in the development of norepinephrine-induced left ventricular remodeling in mice. Cell Physiol Biochem, 23 (2009), 3-4, S. 327-334.
  • Quintana L, zur Nieden NI, Semino CE. Morphogenetic and regulatory mechanisms during devel­opmental chondrogenesis. Tissue Eng Pt B-Rev, 15 (2009), 1, S. 29-41.
  • Sack U, Conrad K, Csernok E, Frank I, Hiepe F, Krieger T, Kromminga A, Landenberg P, Messer G, Witte T, Mierau R, die deutsche EASI-Gruppe (European Autoimmunity Standardization Initiative). Autoantikörpernachweis mittels indirekter Immunfluoreszenz an HEp-2-Zellen. Deut Med Wochenschr, 134 (2009), 24, S. 1278-1282.
  • Sack U, Conrad K, Csernok E, Frank I, Hiepe F, Krieger T, Kromminga A, von Landenberg P, Messer G, Witte T, Mierau R, German EASI (European Autoimmunity Standardization Initiative). Autoantibody detection using indirect immunofluorescence on HEp-2 cells. Ann NY Acad Sci, 1173 (2009), S. 166-73.
  • Saver JL, Albers GW, Dunn B, Johnston KC, Fisher M, STAIR VI Consortium. Stroke Therapy Academic Industry Roundtable (STAIR) recommendations for extended window acute stroke therapy trials. Stroke, 40 (2009), 7, S. 2594-2600.
  • Scheibye-Alsing K, Hoffmann S, Frankel A, Jensen P, Stadler PF, Mang Y, Tommerup N, Gilchrist MJ, Nygard AB, Cirera S, Jorgensen CB, Fredholm M, Gorodkin J. Sequence assembly: review. Comput Biol Chem, 33 (2009), 2, S. 121-136.
  • Schlomann U, Schwamborn JC, Müller M, Fässler R, Püschel AW. The stimulation of dendrite growth by Sema3A requires integrin engagement and focal adhesion kinase. J Cell Sci. 2009 Jun 15;122(Pt 12):2034-42. Epub 2009 May 19.
  • Scholz M, Ackermann M, Emmrich F, Loeffler M, Kamprad M. Effectiveness of cytopenia prophylaxis for different filgrastim and pegfilgrastin schedules in a chemotherapy mouse model. Biologics 3 (2009), S. 27-37.
  • Scholz M, Kamprad M, Ackermann M, Löffler M, Emmrich F, Engel Ch. A Pharmacokinetic Model of Filgrastim and Pegfilgrastim application in Normal and Cyclophosphamide Induced Granulopenic Mice. Cell Proliferat 42 (2009), 6, S. 813-22.
  • Simon P, Burkhardt U, Sack U, Kaisers UX, Muensterer OJ. Inflammatory Response Is No Different in Children Randomized to Laparoscopic or Open Appendectomy. J Laparoendosc Adv A, 19 (2009), Suppl 1, S. S71-S76.
  • Sommer G, Kralisch S, Stangl V, Vietzke A, Köhler U, Stepan H, Faber R, Schubert A, Lössner U, Bluher M, Stumvoll M, Fasshauer M. Secretory products from human adipocytes stimulate proinflammatory cytokine secretion from human endothelial cells. J Cell Biochem, 106 (2009), 4, S. 729-37.
  • Stadler PF, Chen JJ, Hackermüller J, Hoffmann S, Horn F, Khaitovich P, Kretzschmar AK, Mosig A, Prohaska SJ, Qi X, Schutt K, Ullmann K. Evolution of vault RNAs. Mol Biol Evol, 26 (2009), 9, S. 1975-91.
  • Stroh A, Boltze J, Sieland K, Hild K, Gutzeit C, Jung T, Kressel J, Hau S, Reich D, Grune T, Zimmer C. Impact of magnetic labeling on human and mouse stem cells and their long-term magnetic resonance tracking in a rat model of Parkinson disease. Mol Imaging, 8 (2009), 3, S. 166-78.
  • Tessema B, Muche A, Bekele A, Reissig D, Emmrich F, Sack U. Treatment outcome of tuberculosis patients at Gondar University Teaching Hospital, Northwest Ethiopia. A five - year retrospective study. BMC Public Health, 4 (2009), 371.
  • Wechsler L, Steindler D, Borlongan C, Chopp M, Savitz S, Deans R, Caplan L, Hess D, Mays RW, Boltze J, Boncoraglio G, Borlongan CV, Caplan LR, Carmichael ST, Chopp M, Davidoff AW, Deans RJ, Fisher M, Hess DC, Kondziolka D, Mays RW, Norrving B, Parati E, Parent J, Reynolds BA, Gonzalez-Rothi LJ, Savitz S, Sanberg P, Schneider D, Sinden JD, Snyder E, Steinberg GK, Steindler D, Wechsler L, Weiss MD, Weiss S, Victor S, Zheng T. Stem Cell Therapies as an Emerging Paradigm in Stroke Participants. Stem Cell Therapies as an Emerging Paradigm in Stroke (STEPS): bridging basic and clinical science for cellular and neurogenic factor therapy in treating stroke. Stroke, 40 (2009), 2, S. 510-5.
  • Wilcke A, Weissfuss J, Kirsten H, Wolfram G, Boltze J,Ahnert P. The role of gene DCDC2 in German dyslexics. Ann Dyslexia, 59 (2009), 1, S. 1-11.
  • Yerebakan C, Klopsch C, Prietz S, Boltze J, Vollmar B, Liebold A, Steinhoff G, Sandica E. Pressure-volume loops: feasible for the evaluation of right ventricular function in an experimental model of acute pulmonary regurgitation? Interact Cardiovasc Thorac Surg, 9 (2009), 2, S. 163-8.
  • Yerebakan C, Sandica E, Prietz S, Klopsch C, Ugurlucan M, Kaminski A, Abdija S, Lorenzen B, Boltze J, Nitzsche B, Egger D, Barten M, Furlani D, Ma N, Vollmar B, Liebold A, Steinhoff G. Autologous umbilical cord blood mononuclear cell transplantation preserves right ventricular function in a novel model of chronic right ventricular volume overload. Cell Transplant, 18 (2009), 8, S. 855-68.

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Publications 2008

  • Ackermann GE, Domenighetti AA, Deten A, Bonath I, Marenholz I, Pedrazzini T, Erne P, Heizmann CW. S100A1 deficiency results in prolonged ventricular repolarization in response to sympathetic activation. Gen Physiol Biophys 27 (2008), 2, S. 127-42.
  • Amemiya CT, Prohaska SJ, Hill-Force A, Cook A, Wasserscheid J, Ferrier DEK, Pascual-Anaya J, Garcia-Fernandez J, Dewar K, Stadler PF. The amphioxus Hox cluster: Characterization, comparative genomics, and evolution. J Exp Zool Part B 310B (2008), 5, S. 465-477.
  • Aupperle H, März I, Schubert A, Dinges G, Thielebein J, Schoon HA. Störungen des Metabolismus der extrazellularmatrix des Herzens bei der kaninen idiopathischen dilatativen Kardiomyopathie. Der praktische Tierarzt 89 (2008), 12, S. 998-1005.
  • Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. RNAalifold. Improved consensus structure prediction for RNA alignments. BMC Bioinformatics. Online journal 9 (2008), Art. 474, 13S.
  • Bockamp E, Sprengel R, Eshkind L, Lehmann T, Braun JM, Emmrich F, Hengstler JG. Conditional transgenic mouse models: from the basics to genome-wide sets of knockouts and current studies of tissue regeneration. Regen Med 3 (2008), 2, S. 217-35.
  • Bold A, Wurth R, Keller T, Trahorsch T, Voigt P, Schubert S, Sack U. Low-cost enumeration of CD4+ T cells using a density-based negative selection method (RosettaSepTM) for the monitoring of HIV-infected individuals in non-OECD countries. Cytom Part A 73 (2008), 1, S. 28-35.
  • Boltze J, Förschler A, Nitzsche B, Waldmin D, Hoffmann A, Boltze CM, Oreyer AY, Goldammer A, Reischauer A, Härtig W, Geiger KD, Barthel H, Emmrich F, Gille U. Permanent middle cerebral artery occlusion in sheep: a novel large animal model of focal cerebral ischemia. J Cerebr Blood F Met 28 (2008), 12, 1951-64.
  • Cepok S, Hoffmann S, Grummel V, Lehmann-Horn K, Hackermüller J, Stadler PF, Hartung HP, Berthele A, Deisenhammer F, Wasmuth R, Hemmer B. HLA-DRB1 0401 and HLA-DRB1 0408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis. J Neuroimmunol 203 (2008), 2, S. 194.
  • Daegelmann C, Herberth G, Röder S, Herbarth O, Giese T, Krämer U, Behrendt H, Borte M, Heinrich J, Emmrich F, Lehmann I; LISAplus study group. Association between suppressors of cytokine signalling, T-helper type 1/T-helper type 2 balance and allergic sensitization in children. Clin Exp Allergy 38 (2008), 3, S. 438-48.
  • Davis LA, zur Nieden NI. Mesodermal fate decisions of a stem cell: the Wnt switch. Cell Mol Life Sci 65 (2008), 17, S. 2658-2674.
  • Dress AWM, Flamm C, Fritzsch G, Grünewald S, Kruspe M, Prohaska SJ, Stadler PF. Noisy: Identification of problematic columns in multiple sequence alignments. Algorithm Mol Biol. Online journal 3 (2008), Art. 7, 10S.

  • Focke A, Schwarz S, Foerschler A, Scheibe J, Milosevic J, Zimmer C, Schwarz J. Labeling of human neural precursor cells using ferromagnetic nanoparticles. Magn Reson Med. 2008 Dec;60(6):1321-8.

  • Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. Folding kinetics of large RNAs. J Mol Biol 379 (2008), 1, S. 160-173.
  • Gessner C, Dihazi H, Brettschneider S, Hammerschmidt S, Kuhn H, Eschrich K, Keller T, Engelmann L, Sack U, Wirtz H. Presence of cytokeratins in exhaled breath condensate of mechanical ventilated patients. Resp Med 102 (2008), 2, S. 299-306.
  • Goettsch W, Schubert A, Morawietz H. Expression of human endothelinconverting enzyme isoforms: role of angiotensin II. Can J Physiol Pharm 86 (2008), 6, S. 299-309.
  • Gorr TA, Deten A. Manipulating myocyte cell cycle control for cardiac repair. Cardiovasc Res 80 (2008), 2, S. 161-2.
  • Gruber AR, Kilgus C, Mosig A, Hofacker IL, Hennig W, Stadler PF. Arthropod 7SK RNA. Mol Biol Evol 25 (2008), 9, S. 1923-1930.
  • Hau S, Reich DM, Scholz M, Naumann W, Emmrich F, Kamprad M, Boltze, J. Evidence for neuroprotective properties of human umbilical cord blood cells after neuronal hypoxia in vitro. BMC Neurosci (2008), 9, S. 30.
  • Haussig S, Schubert A, Mohr FW, Dhein S. Sub-chronic nicotine exposure induces intercellular communication failure and differential down-regulation of connexins in cultured human endothelial cells. Atherosclerosis 196 (2008), 1, S. 210-8.
  • Hemdan NY. The role of interleukin-12 in the heavy metal-elicited immunomodulation: relevance of various evaluation methods. J Occup Med Toxicol 3 (2008), Art 25, 14S.
  • Hertel J, Hofacker IL, Stadler PF. SnoReport: Computational identification of snoRNAs with unknown targets. Bioinformatics 24 (2008), 2, S. 158-164.
  • Hoffmann S, Cepok S, Grummel V, Lehmann-Horn K, Hackermüller J, Stadler PF, Hartung HP, Berthele A, Deisenhammer F, Wassmuth R, Hemmer B. HLA-DRB1*0401 and HLADRB1* 0408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis. Am J Hum Genet 83 (2008), 2, S. 219-27.
  • Hollenbach M, Hintersdorf A, Huse K, Sack U, Bigl M, Groth M, Santel T, Buchold M, Lindner I, Otto A, Sicker D, Schellenberger D, Almendinger J, Pustowoit B, Birkemeyer C, Platzer M, Oerlecke I, Hemdan NY, Birkenmeier G. Ethyl pyruvate and ethyl lactate down-regulate the production of pro-inflammatory cytokines and modulate expression of immune receptors. Biochem Pharmacol 76 (2008), 5, S. 631-644.
  • Hoppe A, Kamprad M, Wegmann C, Wötzel M, Hauss J, Emmrich F, Fangmann J, Sack U. Natürliche Killerzellen und natürliche Killer-T-Zellen bei Nierentransplanta­tion. Laboratoriumsmedizin 32 (2008), 3, S. 140-147.
  • Jochl C, Rederstorff M, Hertel J, Stadler PF, Hofacker IL, Schrettl M, Haas H, Hüttenhofer A. Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis. Nucleic Acids Res 36 (2008), 8, S. 2677-2689.
  • Jung C, Stöckle C, Wiesmüller KH, Laub R, Emmrich F, Jung G, Melms A. Complementary strategies to elucidate T helper cell epitopes in myasthenia gravis. J Neuroimmunol 201/202 (2008), S. 41-49.
  • Kendziorra K, Barthel H, Erbs S, Emmrich F, Hambrecht R, Schuler G, Sabri O, Kluge R. Effect of Progenitor Cells on Myocardial Perfusion and Metabolism in Patients After Recanalization of a Chronically Occluded Coronary Artery. J Nucl Med 48 (2008), 4, S. 557-563.
  • Kirsten H, Blume M, Emmrich F, Hunzelmann N, Mierau R, Rzepka R, Vaith P, Witte T, Melchers I, Ahnert P. No association between Systemic Sclerosis and the C77G Polymorphism in the Human PTPRC (CD45) Gene. J Rheumatol 35 (2008), 9, S. 1817-1819.
  • Klemm K, Flamm C, Stadler PF. Funnels in energy landscapes. Eur Phys J B 63 (2008), 3, S. 387-391.
  • Kralisch S, Sommer G, Stangl V, Köhler U, Kratzsch J, Stepan H, Faber R, Schubert A, Lössner U, Vietzke A, Bluher M, Stumvoll M, Fasshauer M. Secretory products from human adipocytes impair endothelial function via nuclear factor kappaB. Atherosclerosis 196 (2008), 2, S. 523-31.
  • Krauss V, Thummler C, Georgi F, Lehmann J, Stadler PF, Eisenhardt C. Near intron positions are reliable phylogenetic markers: An application to holometabolous insects. Mol Biol Evol 25 (2008), 5, S. 821-830.
  • Krupp W, Holland H, Koschny R, Bauer M, Schober R, Kirsten H, Livrea M, Meixensberger J, Ahnert P. Genome-wide genetic characterization of an atypical meningioma by single-nucleotide polymorphism array-based mapping and classical cytogenetics. Cancer Genet Cytogenet. 2008 Jul 15;184(2):87-93.
  • Kyaw WO, Uhlig A, Koller G, Sack U, Schusser GF. Freies Hämoglobin und Tumor-Nekrose-Faktor-Alpha im Blut von Pferden mit Kolik oder akuter Kolitis. Berl Munch Tierarztl W 121 (2008), 11-12, S. 440-445.
  • Lehmann J, Stadler PF, Prohaska SJ. SynBlast: Assisting the analysis of conserved synteny information. BMC Bioinformatics. Online journal 9 (2008), Art. 351, 14S.
  • Marz M, Kirsten T, Stadler PF. Evolution of spliceosomal snRNA genes in metazoan animals. J Mol Evol 67 (2008), 6, S. 594-607.
  • Morgenstern V, Zutavern A, Cyrys J, Brockow I, Koletzko S, Krämer U, Behrendt H, Herbarth O, von Berg A, Bauer CP, Wichmann HE, Heinrich J; GINI Study Group; LISA Study Group. Atopic diseases, allergic sensitization, and exposure to trafficrelated air pollution in children. Am J Resp Crit Care M 177 (2008), 12, S. 1331-1337.
  • Perseke M, Fritzsch G, Ramsch K, Bernt M, Merkle D, Middendorf M, Bernhard D, Stadler PF, Schlegel M. Evolution of mitochondrial gene orders in echinoderms. Mol Phylogenet Evol 47 (2008), 2, S. 855-864.
  • Pfefferkorn P, Scholz U, Veneruso V, Nikolaus T, Madin K, Eichenlaub U, Schubert A, Lehmann J. Influence of Serum Deprivation on Adherence and Proliferation of Murine Mesenchymal Progenitor Cells Analysed with Roche´s xCELLigence System. Biochemica (2008), 4, S. 14-16.
  • Pierzchalski A, Robitzki A, Mittag A, Emmrich F, Sack U, O‘Connor JE, Bocsi J, Tarnok A. Cytomics and nanobioengineering. Cytom Part B-Clin Cy 74 (2008), 6, S. 416-426.
  • Rabald S, Marx G, Mix B, Stephani C, Kamprad M, Cross M, Boltze J, Briest W, Zimmer HG, Deten A. Cord blood cell therapy alters LV remodeling and cytokine expression but does not improve heart function after myocardial infarction in rats. Cell Physiol Biochem 21 (2008), 5-6, S. 395-408.
  • Reich DM, Hau S, Stahl T, Scholz M, Naumann W, Emmrich F, Boltze J, Kamprad M. Neuronal hypoxia in vitro: investigation of therapeutic principles of HUCB-MNC and CD133+ stem cells. BMC Neurosci (2008), 9, S. 91.
  • Rose D, Hertel J, Reiche K, Stadler PF, Hackermüller J. NcDNAlign: plausible multiple alignments of non-proteincoding genomic sequences. Genomics 92 (2008), 1, S. 65-74.
  • Rose D, Jöris J, Hackermüller J, Reiche K, Li Q, Stadler PF. Duplicated RNA genes in teleost fish genomes. J Bioinform Comput Biol 6 (2008), 6, 1157-75.
  • Sack U, Emmrich F. Monoklonale Antikörper: Prinzipien, Herstellung, Anwendung und Nebenwirkungen. Internist 49 (2008), 8, S. 921-928.
  • Santel T, Pflug G, Hemdan NY, Schafer A, Hollenbach M, Buchold M, Hintersdorf A, Lindner I, Otto A, Bigl M, Oerlecke I, Hutschenreuter A, Sack U, Huse K, Groth M, Birkemeyer C, Schellenberger W, Gebhardt R, Platzer M, Weiss T, Vijayalakshmi MA, Kruger M, Birkenmeier G. Curcumin inhibits glyoxalase 1: a possible link to its antiinflammatory and anti-tumor activity. PLoS ONE (2008), 3, S. e3508.
  • Schimmelpfennig C. Biolumineszenz- und Fluoreszenz-Imaging: Ein neues Verfahren zur nicht-invasiven Bildgebung von zellbiologischen Prozessen in Kleintieren. Ingenieur Nachrichten (2008), 2, S. 10.
  • Schimmelpfennig C, Schmiedeknecht A, Emmrich F. Visualisierung von Immunfunktionen mithilfe von Biolumineszenz Imaging. Biospektrum 14 (2008), 5, S. 481-482.
  • Schoefer Y, Zutavern A, Brockow I, Schäfer T, Krämer U, Schaaf B, Herbarth O, von Berg A, Wichmann HE, Heinrich J; LISA study group. Health risks of early swimming pool attendance. Int J Hyg Envir Heal 211 (2008), 3-4, S. 367-73.
  • Schulz SM, Köhler G, Schütze N, Knauer J, Straubinger RK, Chackerian AA, Witte E, Wolk K, Sabat R, Iwakura Y, Hölscher C, Müller U, Kastelein RA, Alber G. Protective immunity to systemic infection with attenuated Salmonella enterica serovar enteritidis in the absence of IL-12 is asso ciated with IL-23-dependent IL-22, but not IL-17. J Immunol 181 (2008), 11, S. 7891-901.
  • Sonnleitner E, Sorger-Domenigg T, Madej MJ, Findeiss S, Hackermüller J, Hüttenhofer A, Stadler PF, Bläsi U, Moll I. Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools. Microbiology 154 (2008), 10, S. 3175-87.
  • Stolzing A, Jones E, McGonagle D, Scutt A. Age related changes in human bone marrow-derived mesenchymal stem cells: consequences for cell therapies. Mech Ageing Dev, 129 (2008), 3, S. 163-173.
  • Treese C, Mittag A, Lange F, Tarnok A, Loesche A, Emmrich F, Lehmann J, Sack U. Characterization of fibroblasts responsible for cartilage destruction in arthritis. Cytom Part A 73 (2008), 3, S. 351-360.
  • Trepnau D, Ulrich E, Uhlig R, Lindner T, Selbitz HJ, Rösler U, Gabert J, Bergfeld U, Fehlhaber K, Brabetz W, Lehmann J. Antikörperantwort nach Impfung von Mastschweinen mit einem Salmonella-Typhimurium-Lebendimpfstoff in Abhängigkeit von der Applikationsform. Berl Munch Tierarztl 121 (2008), 9-10, S. 334-340.
  • Ueberham E, Lindner R, Kamprad M, Hiemann R, Hilger N, Woithe B, Mahn D, Cross M, Sack U, Gebhardt R, Arendt T, Ueberham U. Oval cell proliferation in p16INK4a expressing mouse liver is triggered by chronic growth stimuli. J Cell Mol Med 12 (2008), 2, S. 622-638.
  • Weimann A, Eisele RM, Pawellek S, Hippler-Benscheid M, Rüggeberg A, Cammann H, Radke C, Müller C, Klupp J, Sack U, Lun A. Diagnostic value of peripheral blood markers for acute rejection in LTX-patients receiving anti IL-2R antibodies. Laboratoriumsmedizin 32 (2008), 3, S. 148-157.
  • Willms H, Wiechmann V, Sack U, Gillissen A. Tracheobronchopathia osteochondroplastica: A rare cause of chronic cough with haemoptysis. Cough 4 (2008), 4, 4S.
  • Zutavern A, Brockow I, Schaaf B, von Berg A, Diez U, Borte M, Kraemer U, Herbarth O, Behrendt H, Wichmann HE, Heinrich J; LISA Study Group. Timing of solid food introduction in relation to eczema, asthma, allergic rhinitis, and food and inhalant sensitization at the age of 6 years: results from the prospective birth cohort study LISA. Pediatrics (2008), 121, S. e44-52.

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Publications 2007

  • Ahnert P, Kirsten H. Association of ITGAV supports a role of angiogenesis in rheumatoid arthritis. Arthritis Res Ther. 2007;9(5):108.
  • Athanasius F, Bompfünewerer Consortium, Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. RNAs everywhere: genome-wide annotation of structured RNAs. J Exp Zool Part B (2007), 308, S. 1-25.
  • Aupperle H, Garbade J, Schubert A, Barten M, Dhein S, Schoon HA, Mohr FW. Effects of autologous stem cells on immunohistochemical patterns and gene expression of metalloproteinases and their tissue inhibitors in doxorubicin cardiomyopathy in a rabbit model. Vet Pathol 44 (2007), 4, S. 494-503.
  • Averbeck M, Gebhardt C, Emmrich F, Treudler R, Simon JC. Immunologic principles of allergic disease. J Dtsch Dermatol Ges 5 (2007), 11, S. 1015-28.
  • Backofen R, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Prohaska SJ, Mosig A, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. RNAs everywhere: genome-wide annotation of structured RNAs. J Exp Zool Part B, 308B (2007), 1, S. 1-25.
  • Bernt M, Merkle D, Ramsch K, Fritzsch G, Perseke M, Bernhard D, Schlegel M, Stadler PF, Middendorf M. CREx: inferring genomic rearrangements based on common intervals. Bioinformatics 23 (2007), 21, S. 2957-2958.
  • Brulport M, Schormann W, Bauer A, Hermes M, Elsner C, Hammersen FJ, Beerheide W, Spitkovsky D, Hartig W, Nussler A, Horn LC, Edelmann J, Pelz-Ackermann O, Petersen J, Kamprad M, von Mach M, Lupp A, Zulewski H, Hengstler JG. Fate of extrahepatic human stem and precursor cells after transplantation into mouse livers. Hepatology 46 (2007), 3, S. 861-870.
  • Brumme S, Arnold T, Sigmarsson H, Lehmann J, Scholz HC, Hardt WD, Hensel A, Truyen H, Roesler U. Impact of Salmonella Typhimurium DT104 Virulence Factors invC and sseD affecting the onset, clinical course, colonization patterns and immune response of porcine salmonellosis. Vet Microbiol, 124 (2007), 3-4, S. 274-285.
  • Emmrich, F. Regenerative Medicine Today. BioWorld EUROPE Special Edition 1 (2007), S. 2-4.
  • ENCODE Project Consortium. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007), 447, S. 799-816.
  • Fangmann J, Wegmann C, Hoppe A, Martin P, Sack U, Harms J, Faber S, Emmrich F. Characterization of dendritic cell subsets in patients undergoing renal transplantation. Transplant Proc 39 (2007), 10, S. 3101-3104.
  • Förschler A, Boltze J, Waldmin D, Gille U, Zimmer C. MRI of experimental focal cerebral ischemia in sheep. Rofo 179 (2007), 5, S. 516-24.
  • Gebauer CM, Lenk H, Friedrich W, Sack U, Schuster V. Severe clinical course of Wiskott-Aldrich-syndrome – clinical course, hematologic, immunologic and genetic findings. Kinder- und Jugendmedizin (2007), 7, S. 39-44.
  • Gessner C, Hammerschmidt S, Kuhn H, Hoheisel G, Gillissen A, Sack U, Wirtz H. Breath Condensate nitrite correlates with hyperinflation in chronic obstructive pulmonary disease. Resp Med 101 (2007), 11, S. 2271-2278.
  • Hackermüller J, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447 (2007), 7146, S. 799-816.
  • Hemdan NY, Emmrich F, Faber S, Lehmann J, Sack U. Alterations of Th1/Th2 reac tivity by heavy metals – Possible consequences include induction of autoimmune diseases. Ann NY Acad Sci (2007), 1109, S. 129-137.
  • Hemdan NY, Lehmann I, Wichmann G, Lehmann J, Emmrich F, Sack U. Immunomodulation by mercuric chloride in vitro: application of different cell activation pathways. Clin Exp Immunol 148 (2007), 2, S. 325-37.
  • Hiemann R, Hilger N, Michel J, Nitschke J, Bohm A, Anderer U, Weigert M, Sack U. Automatic analysis of immunofluorescence patterns of HEp-2 cells. Ann NY Acad Sci 1109 (2007), 1, S. 358-371.

  • Holland H, Koschny R, Krupp W, Meixensberger J, Bauer M, Kirsten H, Ahnert P. Comprehensive cytogenetic characterization of an esthesioneuroblastoma. Cancer Genet Cytogenet. 2007 Mar;173(2):89-96.

  • Holland H, Koschny R, Krupp W, Meixensberger J, Bauer M, Schober R, Kirsten H, Ganten TM, Ahnert P. Cytogenetic and molecular biological characterization of an adult medulloblastoma. Cancer Genet Cytogen 178 (2007), 2, S. 104-113.
  • Kaltenhäuser S, Pierer M, Arnold S, Kamprad M, Baerwald C, Hantzschel H, Wagner U. Anti-bodies against cyclic citrullinated peptide are associated with the DRB1 shared epitope and predict joint erosion in rheumatoid arthritis. Rheumatology 46 (2007), 1, S. 100-104.
  • Kamprad M, Kindler S, Schuetze N, Emmrich F. Flow cytometric immunophenotyping of umbilical cord and peripheral blood haematopoietic progenitor cells by different CD34 epitopes, CD133, P-glycoprotein expression and rhodamine-123 efflux. Transfus Med  Hemoth 34 (2007), 3, S. 195-203.
  • Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science  316 (2007), 5830, S. 1484-1488.
  • Kirsten H, Teupser D, Weissfuss J, Wolfram G, Emmrich F, Ahnert P. Robustness of single-base extension against mismatches at the site of primer attachment in a clinical assay. J Mol Med 85 (2007), 4, S. 361-9.
  • Kruspe M, Stadler PF. Progressive multiple sequence alignments from triplets. BMC Bioinformatics. Online journal 8 (2007), S. 254.
  • Löffler D, Brocke-Heidrich K, Pfeifer G, Stocsits C, Hackermüller J, Kretzschmar AK, Burger R, Gramatzki M, Blumert C, Bauer K, Cvijic H, Ullmann AK, Stadler PF, Horn F. Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer. Blood 110 (2007), 4, S. 1330-3.
  • Meier H, Bullinger J, Deten A, Marx G, Rabald S, Zimmer HG, Briest W. Tissue inhibitor of matrix metalloproteinase-1 in norepinephrine-induced remodeling of the mouse heart. Cell Physiol Biochem 20 (2007), 6, S. 825-836.
  • Meng GL, zur Nieden NI, Liu SY, Cormier JT, Kallos MS, Rancourt DE. Properties of murine embryonic stem cells maintained on human foreskin fibroblasts without LIF. Mol Reprod Dev, 75 (2007), 4, S. 614-622.
  • Mosig A, Guofeng M, Stadler BMR, Stadler PF. Evolution of the vertebrate Y RNA cluster. Theor Biosci 126 (2007), 1, S. 9-14.
  • Rabald S, Hagendorff A, Pfeiffer D, Zimmer HG, Deten A. Contrast enhanced echocardiographic follow-up of cardiac remodeling and function after myocardial infarction in rats. Ultrasound Med Biol (2007), 33, S. 1561-1571.
  • Rose D, Hackermüller J, Washietl S, Reiche K, Hertel J, Findeiß S, Stadler PF, Prohaska SJ. Computational RNomics of drosophilids. BMC Genomics. Online journal 8 (2007), Art. 406.
  • Saalbach A, Klein C, Sleeman J, Sack U, Kauer F, Gebhardt C, Averbeck M, Anderegg U, Simon JC. Dermal fibroblasts induce maturation of dendritic cells. J Immunol 178 (2007), 8, S. 4966-4974.
  • Sack U, Bocsi J, Tarnok A. Importance of cytometry for clinical diagnostics and therapy. Transfus Med Hemoth 34 (2007), 3, S. 153-154.
  • Sack U, Conrad K, Csernok E, Frank I, Haass M, Krieger T, Seyfarth M, Schlosser U, Schmidt R, Witte T. Standardization of autoimmune diagnostics in Germany: activities of the German group in the European Autoimmune Standardization Initiative. Ann NY Acad Sci (2007), 1109, S. 31-36.
  • Sack U, Gerling F, Tarnok A. Age-related lymphocyte subset changes in the peripheral blood of healthy children – A metastudy. Transfus Med Hemoth 34 (2007), 3, S. 176-181.
  • Savkovic V, Gantzer H, Reiser U, Selig L, Gaiser S, Sack U, Kloppel G, Mossner J, Keim V, Horn F, Bodeker H. Clusterin is protective in pancreatitis through anti-apoptotic and anti-inflammatory properties. Biochem Bioph Res Co 356 (2007), 2, S. 431-437.
  • Schloendorn J, Sethe S, Stolzing A. Cellular therapy using microglial cells. Rejuv Res 10 (2007), 1, S. 87-99.

  • Schmidt A, Haas SJ, Hildebrandt S, Scheibe J, Eckhoff B, Racek T, Kempermann G, Wree A, Pützer BM. Selective targeting of adenoviral vectors to neural precursor cells in the hippocampus of adult mice: new prospects for in situ gene therapy. Stem Cells. 2007 Nov;25(11):2910-8. Epub 2007 Jul 19.

  • Schwenk M, Sack U, Esser C, Klein R. Diagnostic relevance of the determination of lymphocyte subpopulations in environmental medicine. Int J Hyg Envir Heal 210 (2007), 2, S. 177-198.
  • Schwamborn JC, Müller M, Becker AH, Püschel AW. Ubiquitination of the GTPase Rap1B by the ubiquitin ligase Smurf2 is required for the establishment of neuronal polarity. EMBO J. 2007 Mar 7;26(5):1410-22. Epub 2007 Feb 22.
  • Sharma N, Kaur J, Xhu H, zur Nieden NI, Rancourt DE. Characterization of secretory leukocyte protease inhibitor (SLPI) as an inhibitor of implantation serine proteinase. Mol Reprod Dev, 75 (2007), 7, S. 1136-1142.
  • Stolzing A, Hescheler J, Sethe S. Fusion and regenerative therapies: is immortality really recessive? Rejuv Res 10 (2007), 4, S. 571-86.
  • Tanneberger K, Kirchberger J, Bar J, Schellenberger W, Rothemund S, Kamprad M, Otto H, Schoneberg T, Edelmann A. A novel form of 6-phosphofructokinase – Identification and functional relevance of a third type of subunit in pichia pastoris. J Biol Chem 282 (2007), 32, S. 23687-23697.
  • Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF. Structured RNAs in the ENCODE selected regions of the human genome. Genome Res 17 (2007), 6, S. 852-64.
  • zur Nieden NI, Cormier JT, Rancourt DE, Kallos MS. Embryonic stem cells remain highly pluripotent following long term expansion as aggregates in suspension bioreactors. J Biotechnol 129 (2007), 3, S. 421-432.
  • zur Nieden NI, Price FD, Davis LA, Everitt R, Rancourt DE. Gene profiling on mixed embryonic stem cell populations reveals a biphasic role for beta-catenin in osteogenic differentiation. Mol Endocrinol 21 (2007), 3, S. 674-685.

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Publications 2006

  • Baumann JG. Intracellular restriction factors in mammalian cells – an ancient defense system finds a modern foe. Curr HIV Res, 4 (2006), 2, S. 141-168.
  • Birkenmeier G, Nicklisch S, Pockelt C, Mossie A, Steger V, Glaser C, Hauschildt S, Usbeck E, Huse K, Sack U, Bauer M, Schafer A. Polymyxin B-conjugated alpha 2-macroglobulin as an adjunctive therapy to sepsis: modes of action and impact on lethality. J Pharmacol Exp Ther, 318 (2006), 2, S. 762-771.
  • Bocsi J, Lenz D, Mittag A, Varga VS, Molnar B, Tulassay Z, Sack U, Tarnok A. Automated four-color analysis of leukocytes by scanning fluorescence microscopy using quantum dots. Cytom Part A, 69 (2006), 3, S. 131-134.
  • Bocsi J, Mittag A, Sack U, Gerstner AO, Barten MJ, Tarnok A. Novel aspects of systems biology and clinical cytomics. Cytom Part A, 69 (2006), 3, S. 105-108.
  • Boltze J, Kowalski I, Forschler A, Schmidt U, Wagner D, Lobsien D, Emmrich J, Egger D, Kamprad M, Blunk J, Emmrich F. The stairway: a novel behavioral test detecting sensomotoric stroke deficits in rats. Artif Organs, 30 (2006), 10, S. 756-763.
  • Brocke-Heidrich K, Ge B, Cvijic H, Pfeifer G, Loffler D, Henze C, McKeithan TW, Horn F. BCL3 is induced by IL-6 via Stat3 binding to intronic enhancer HS4 and represses its own transcription. Oncogene, 25 (2006), 55, S. 7297-7304.
  • Colsman A, Sticherling M, Stopel C, Emmrich F. Computer-assisted learning in medicine : how to create a novel software for immunology. Arch Dermatol Res, 298 (2006), 1, S. 1-6.
  • Cormier JT, zur Nieden NI, Rancourt DE, Kallos MS. Expansion of undifferentiated murine embryonic stem cells as aggregates in suspension culture bioreactors. Tissue Eng, 12 (2006), 11, S. 3233-3245.
  • Dietrich A, Stockmar C, Aust G, Endesfelder S, Guetz A, Sack U, Schoenfelder M, Hauss J. Intraoperative subcutaneous or intrasplenic vaccination with modified autologous tumor cells leads to enhanced survival in a mouse tumor model. J Cancer Res Clin, 132 (2006), 6, S. 379-388.
  • Ehlers J, Alt M, Trepnau D, Lehmann J. Anwendung neuer Immunglobulin-isotypspezifischer ELISA-Systeme zur Erkennung von Salmonelleninfektionen bei Schweinen. Berl Munch Tierarztl 119 (2006), 11-12, S. 461-466.
  • Emmrich F. Regenerative Medizin – Made in Germany. Zeitschrift für Regenerative Medizin, 1. Jahrg. (2006), 1.
  • Funke B, Jungel A, Schastak S, Wiedemeyer K, Emmrich F, Sack U. Transdermal photodynamic therapy-a treatment option for rheumatic destruction of small joints? Laser Surg Med, 38 (2006), 9, S. 866-874.
  • Giese M, Liebert UG, Schneider T, Bock K, Zahn N, Uhlig A, Schusser GF. Therapeutical immunization of EAV-infected horses by DNA-Vaccination. Reprod Domest Anim 41 (2006), 4, S. 297-298.
  • Härtig W, Lehmann J, Stieler J, Singer D, Grosche J, Arendt T, Hoffmann R. Simultaneous detection of tau phospho-epitopes with haptenylated antibodies. Neuroreport, 17 (2006), 9, S. 869-875.
  • Hemdan NY, Emmrich F, Sack U, Wichmann G, Lehmann J, Adham K, Lehmann I. The in vitro immune modulation by cadmium depends on the way of cell activation. Toxicology 222 (2006), 1-2, S. 37-45.
  • Hiemann R, Hilger N, Sack U, Weigert M. Objective quality evaluation of fluorescence images to optimize automatic image acquisition. Cytom Part A, 69 (2006), 3, S. 182-184.
  • Kirsten H, Dienst S, Emmrich F, Ahnert P. CalcDalton: a tool for multiplex genotyping primer design for single-base extension reactions using cleavable primers. Biotechniques, 40 (2006), 2, S. 158-160.
  • Koschny R, Holland H, Koschny T, Vitzthum HE. Comparative genomic hybridization pattern of non-anaplastic and anaplastic oligodendrogliomas – a meta-analysis. Pathol Res Pract, 202 (2006), 1, S. 23-30.
  • Lange F, Hartl S, Ungethuem U, Kuban RJ, Hammerschmidt S, Faber S, Morawietz L, Wirtz H, Emmrich F, Krenn V, Sack U. Anti-TNF effects on destructive fibroblasts depend on mechanical stress. Scand J Immunol, 64 (2006), 5, S. 544-553.
  • Lehmann J, Springer S, Werner CE, Lindner T, Bellmann S, Straubinger RK, Selbitz HJ, Alber G. Immunity induced with a Salmonella enterica serovar enteritidis live vaccine is regulated by Th1-cell-dependent cellular and humoral effector mechanisms in susceptible BALB/c mice. Vaccine, 24 (2006), 22, S. 4779-4793.
  • Mishto M, Bellavista E, Santoro A, Stolzing A, Ligorio C, Nacmias B, Spazzafumo L, Chiapelli M, Licastro F, Sorbi S, Pession A, Ohm T, Grune T, Franceschi C. Immunoproteasome and LMP2 polymorphism in aged and Alzheimer’s disease brains. Neurobiol Aging, 27 (2006), 1, S. 54-66.
  • Mittag A, Lenz D, Bocsi J, Sack U, Gerstner AO, Tarnok A. Sequential photobleaching of fluorochromes for polychromatic slide-based cytometry. Cytom Part A, 69 (2006), 3, S. 139-141.
  • Morawietz H, Erbs S, Holtz J, Schubert A, Krekler M, Goettsch W, Kuss O, Adams V, Lenk K, Mohr FW, Schuler G, Hambrecht R. Endothelial protection, AT1 blockade and cholesterol-dependent oxidative stress: the EPAS trial. Circulation, 114 (2006), 1, S. 1296-1301.
  • Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Thermodynamics of RNA-RNA binding. Bioinformatics 22 (2006), 10, S. 1177-1182.
  • Müller H, Johne R, Schusser G, Giese M, Linke S, Pauli G. West Nile Virus - Causative agent of a zoonosis with increasing significance? Deut Tierarztl Woch 113 (2006), 12, S. 435-439.
  • Pohl S, Fricke S, Hildebrandt G, Uharek L, Braun JM, Emmrich F. Permanent induction of specific immunotolerance to allograft and prevention of graft-versushost-disease. Zeitschrift für Regenerative Medizin (2006), 1, S. 60.
  • Poppek D, Keck S, Ermack G, Jung T, Stolzing A, Ullrich O, Davies KJ, Grune T. Phosphorylation inhibits turnover of the tau protein by the proteasome: influence of RCAN1 and oxidative stress. Biochem J 400 (2006), 3, S. 511-520.
  • Rulli SJjr, Muriaux D, Nagashima K, Mirro J, Oshima M, Baumann JG, Rein A. Mutant murine leukemia virus Gag proteins lacking proline at the N-terminus of the capsid domain block infectivity in virions containing wild-type Gag. Virology, 347 (2006), 2, S. 364-371.
  • Sack U, Biereder B, Elouahidi T, Bauer K, Keller T, Trobs RB. Diagnostic value of blood inflammatory markers for detection of acute appendicitis in children. BMC Surg 6 (2006), 15.
  • Sack U, Scheibe R, Wötzel M, Hammerschmidt S, Kuhn H, Emmrich F, Hoheisel G, Wirtz H, Gessner C. Multiplex analysis of cytokines in exhaled breath condensate. Cytom Part A, 69 (2006), 3, S. 169-172.
  • Seleverstov O, Zabirnyk O, Zscharnack M, Bulavina L, Nowicki M, Heinrich JM, Yezhelyev M, Emmrich F, O Regan R, Bader A. Quantum dots for human mesenchymal stem cells labeling. A size-dependent autophagy activation. Nano Lett, 6 (2006), 12, S. 2826-2832.
  • Selig L, Sack U, Gaiser S, Kloppel G, Savkovic V, Mossner J, Keim V, Bodeker H. Characterisation of a transgenic mouse expressing R122H human cationic trypsinogen. BMC Gastroenterol (2006), 6, S. 30ff.
  • Sethe S, Scutt A, Stolzing A. Aging of mesenchymal stem cells. Aging Res Rev (2006), 5, S. 91-116.
  • Singer D, Lehmann J, Hanisch K, Härtig W, Hoffmann R. Neighbored phosphorylation sites as PHF-tau specific markers in Alzheimer’s disease. Biochem Bioph Res Co (2006), 346, S. 819-828.
  • Stolzing A, Scutt A. Age-related impairment of mesenchymal progenitor cell function. Aging Cell (2006), 5, S. 213-224.
  • Stolzing A, Scutt A. Effect of reduced culture temperature on antioxidant defences of mesenchymal stem cells. Free Radical Bio Med, 41 (2006), 2, S. 326-38.
  • Stolzing A, Scutt A. Glucose-induced replicative senescence in mesenchymal stem cells. Rejuv Res, 9 (2006), 1, S. 31-35.
  • Stolzing A, Sethe S, Scutt A. Stressed stem cells: temperature response in aged mesenchymal stem cells. Stem Cells Dev, 15 (2006), 4, S. 478-87.
  • Stolzing A, Widmer R, Jung T, Grune T. Tocopherol-mediated modulation of age-related changes in microglial cells: turnover of extracellular oxidized protein material. Free Radical Bio Med 40 (2006), 12, S. 2126-2135.
  • Stolzing A, Widmer R, Jung T, Voss P, Grune T. Degradation of glycated bovine serum albumin in microglial cells. Free Radical Bio Med, 40 (2006), 6, S. 1017-1027.
  • Walther T, Schubert A, Wustmann T, Falk V, Walther C, Doll N, Rastan A, Gummert J, Mohr FW. Reverse remodeling of cardiac collagen protein expression after surgical therapy for experimental aortic stenosis. J Heart Valve Dis, 15 (2006), 5, S. 651-6.

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Publications 2005

  • Aust G, Kamprad M, Lamesch P, Schmücking E. CXCR6 within T-helper (Th) and T-cytotoxic (Tc) type 1 lymphocytes in Graves’ disease (GD). Eur J Endocrinol, 152 (2005), 4, S. 635-643.
  • Boltze J, Kowalski I, Geiger K, Reich D, Gunther A, Buhrle C, Egger D, Kamprad M, Emmrich F. Experimental treatment of stroke in spontaneously hypertensive rats by CD34+ and CD34-cord blood cells. Ger Med Sci, 3, Doc09 (2005), 20051110.

  • Burkhardt C, Müller M, Badde A, Garner CC, Gundelfinger ED, Püschel AW. Semaphorin 4B interacts with the post-synaptic density protein PSD-95/SAP90 and is recruited to synapses through a C-terminal PDZ-binding motif. FEBS Lett. 2005 Jul 4;579(17):3821-8.

    Deten A, Marx G, Briest W, Christian Volz H, Zimmer HG. Heart function and molecular biological parameters are comparable in young adult and aged rats after chronic myocardial infarction. Cardiovasc Res. 2005 May 1;66(2):364-73. Epub 2005 Jan 7.

    Deten A, Volz HC, Clamors S, Leiblein S, Briest W, Marx G, Zimmer HG. Hematopoietic stem cells do not repair the infarcted mouse heart. Cardiovasc Res. 2005 Jan 1;65(1):52-63.

  • Erbs S, Linke A, Adams V, Lenk K, Thiele H, Diederich KW, Emmrich F, Kluge R, Kendziorra K, Sabri O, Schuler G, Hambrecht R. Transplantation of blood-derived progenitor cells after recanalization of chronic coronary artery occlusion: first randomized and placebo-controlled study. Circ Res, 97 (2005), 8, S. 756-762.
  • Garbade J, Schubert A, Rastan AJ, Lenz D, Walther T, Gummert JF, Dhein S, Mohr FW. Fusion of bone marrow-derived stem cells with cardiomyocytes in a heterologous in vitro model. Eur J Cardio-Thorac, 28 (2005), 5, S. 685-91.
  • Gessner C, Scheibe R, Wötzel M, Hammerschmidt S, Kuhn H, Engelmann L, Hoheisel G, Sack U. Exhaled breath condensate cytokine patterns in chronic obstructive pulmonary disease. Resp Med, 99 (2005), 10, S. 1229-1240.
  • Gielen S, Adams V, Linke A, Erbs S, Mobius-Winkler S, Schubert A, Schuler G, Hambrecht R. Exercise training in chronic heart failure: correlation between reduced local inflammation and improved oxidative capacity in the skeletal muscle. Eur J Cardiov Prev R,12 (2005), 4, S. 393-400.
  • Hambrecht R, Schulze PC, Gielen S, Linke A, Mobius-Winkler S, Erbs S, Kratzsch J, Schubert A, Adams V, Schuler G. Effects of exercise training on insulin-like growth factor-I expression in the skeletal muscle of non-cachectic patients with chronic heart failure. Eur J Cardiov Prev R,12 (2005), 4, S. 401-6.
  • Hammerschmidt S, Kuhn H, Sack U, Schlenska A, Gessner C, Gillissen A, Wirtz H. Mechanical stretch alters alveolar type II cell mediator release toward a proinflammatory pattern. Am J Resp Cell Mol, 33 (2005), 2, S. 203-210.
  • Hemdan NY, Emmrich F, Adham K, Wichmann G, Lehmann I, El-Massry A, Ghoneim H, Lehmann J, Sack U. Dose-dependent modulation of the in vitro cytokine production of human immune competent cells by lead salts. Toxicol Sci, 86 (2005), 1, S. 75-83.
  • Holtick U, Vockerodt M, Pinkert D, Schoof N, Sturzenhofecker B, Kussebi N, Lauber K, Wesselborg S, Löffler D, Horn F, Trümper L, Kube D. STAT3 is essential for Hodgkin lymphoma cell proliferation and is target of tyrphostin AG17 which confers sensitization for apoptosis. Leukemia, 19 (2005), 6, S. 936-944.
  • Kupatt C, Horstkotte J, Vlastos GA, Pfosser A, Lebherz C, Semisch M, Thalgott M, Büttner K, Browarzyk C, Mages J, Hoffmann R, Deten A, Lamparter M, Müller F, Beck H, Büning H, Boekstegers P, Hatzopoulos AK. Embryonic endothelial progenitor cells expressing a broad range of proangiogenic and remodeling factors enhance vascularization and tissue recovery in acute and chronic ischemia. FASEB J. 2005 Sep;19(11):1576-8. Epub 2005 Jul 11.
  • Lange F, Bajtner E, Caspar T, Rintisch C, Nandakumar KS, Sack U, Holmdahl R. Methotrexate ameliorates T cell dependent autoimmune arthritis and encephalomyelitis but not antibody induced or fibroblast induced arthritis. Ann Rheum Dis, 64 (2005), 4, S. 599-605.
  • Lenk K, Adams V, Lurz P, Erbs S, Linke A, Gielen S, Schmidt A, Scheinert D, Biamino G, Emmrich F, Schuler G, Hambrecht R. Therapeutical potential of blood-derived progenitor cells in patients with peripheral arterial occlusive disease and critical limb ischaemia. Eur Heart J, 26 (2005), 18, S. 1903-1909.
  • Lenz D, Barten MJ, Hiller S, Tarnok A, Sack U. Regenerative and predictive medicine of cardiovascular disease: the 9th Leipziger Workshop and the 2nd International Workshop on slide based cytometry. Cytom Part A, 64 (2005), 2, S. 110-114.
  • Linke A, Adams V, Schulze PC, Erbs S, Gielen S, Fiehn E, Mobius-Winkler S, Schubert A, Schuler G, Hambrecht R. Antioxidative effects of exercise training in patients with chronic heart failure. Increase in radical scavenger enzyme activity in skeletal muscle. Circulation, 111 (2005), 14, S. 1763-70.
  • Mittag A, Lenz D, Gerstner AO, Sack U, Steinbrecher M, Koksch M, Raffael A, Bocsi J, Tarnok A. Polychromatic (eight-color) slide-based cytometry for the phenotyping of leukocyte, NK, and NKT subsets. Cytom Part A, 65 (2005), 2, S. 103-115.
  • Moche M, Hui DSC, Huse K, Chan KS, Choy DKL, Tannapfel A, Scholz GH, Gosse H, Sack U, Hoheisel G. Matrix metalloproteinases and their inhibitors in lung cancer with malignant pleural effusion. Pneumologie, 59 (2005), 8, S. 523-528.
  • Pelz O, Wu M, Nikolova T, Kamprad M, Ackermann M, Egger D, Emmrich F, Wobus AM, Cross M. Duplex polymerase chain reaction quantification of human cells in a murine background. Stem Cells, 23 (2005), 6, S. 828-833.
  • Pohlers D, Siegling A, Buchner E, Schmidt-Weber CB, Palombo-Kinne E, Emmrich F, Brauer R, Kinne RW. Expression of cytokine mRNA and protein in joints and lymphoid organs during the course of rat antigen-induced arthritis. Arthritis Res Ther, 7 (2005), 3, S. 445-457.
  • Rastan AJ, Walther T, Kostelka M, Garbade J, Schubert A, Stein A, Dhein S, Mohr FW. Morphological, electrophysiological and coupling characteristics of bone marrow-derived mononuclear cells-an in vitro-model. Eur J Cardio-Thorac, 27 (2005), 1, S. 104-10.
  • Sack U, Hirth A, Funke B, Wiedemeyer K, Lange F, Troltzsch M, Tannapfel A, Gebhardt R, Emmrich F, Lehmann J. A novel model of fibroblast-mediated cartilage destruction. Scand J Immunol, 61 (2005), 1, S. 18-28.
  • Sack U, Hoffmann M, Zhao XJ, Chan KS, Hui DS, Gosse H, Engelmann L, Schauer J, Emmrich F, Hoheisel G. Vascular endothelial growth factor in pleural effusions of different origin. Eur Respir J, 25 (2005), 4, S. 600-604.
  • Sack U, Sehm B, Kahlenberg F, Murr A, Lehmann J, Tannapfel A, Uberla K, Moessner A, Dietrich A, Emmrich F, Lange F, Jungel A, Braun JM, Anderegg U. Investigation of arthritic joint destruction by a novel fibroblastbased model. Ann NY Acad Sci 1051 (2005), 1, S. 291-298.
  • Schastak S, Jean B, Handzel R, Kostenich G, Hermann R, Sack U, Orenstein A, Wang YS, Wiedemann P. Improved pharmacokinetics, biodistribution and necrosis in vivo using a new near infra-red photosensitizer: tetrahydroporphyrin tetratosylat. J Photoch Photobio B, 78 (2005), 3, S. 203-213.
  • Schneider A, Sack U, Rothe K, Bennek J. Peritoneal taurolidine lavage in children with localised peritonitis due to appendicitis. Pediatr Surg Int 21 (2005), 6, S. 445-448.
  • Stolzing A, Sethe S, Grune T. Chronically active - role of oxidative stress in age and neuropathology. Redox Rep, 10 (2005), 4, S. 207-13.
  • Wötzel M, Schröder S, Sack U. Differentiation of anti-platelet antibodies using microspheres and flow cytometry. J Lab Clin Med (2005), 29, S. 368-376.
  • zur Nieden NI, Kempka G, Rancourt DE, Ahr HJ. Induction of chondro-, osteoand adipogenesis in embryonic stem cells by bone morphogenetic protein-2: Effect of co-factors on differentiating lineages. BMC Dev Biol 5 (2005), 1, S. 1-15.

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